Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq15821 118 2e-21 seq5826 113 1e-19 >seq15821 Length=35697 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || || ||||||||||||||||| |||| | || | |||||| Sbjct 925 AGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 866 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| ||||||||||| || | | || |||||||| || Sbjct 865 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 806 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || || || || || Sbjct 805 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTCGAGGGTGATG 749 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 748 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 714 Score = 105 bits (116), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || || ||||||||||||||||| || | | || | |||||| Sbjct 469 AGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 410 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||| ||||||||||| || | | || |||||||| || Sbjct 409 TCCAGCTGCTTGCCAGCGAAGTGCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 350 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || || || || || Sbjct 349 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTCGAGGGTGATG 293 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| |||||| || Sbjct 292 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 255 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || || || || ||||||||||| || | | ||| | |||||| Sbjct 697 AGCACGAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCT 638 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || |||||||||||||| || | | || |||||||| || Sbjct 637 TCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 578 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| |||||||| || || Sbjct 577 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACTTCAAGGGTGATG 521 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || |||||||| || | |||||| Sbjct 520 GTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 486 >seq5826 Length=5185 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || ||||||||||| || | | || | ||||||||| | Sbjct 4824 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCA 4882 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| ||||||||||| || | | || |||||||| || || | Sbjct 4883 GCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGA 4942 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || |||||| |||| | | |||| ||| ||| || || || || || || | Sbjct 4943 TCTTAGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCT 4999 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| || || ||||||||||||| ||||||||| Sbjct 5000 TGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 5033 Score = 111 bits (122), Expect = 4e-19 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || ||||| || ||||||||||| || | | || | ||||||||| || Sbjct 4372 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 4431 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || |||||||| ||||||||||| || | | || |||||||| || || || || Sbjct 4432 TTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTA 4491 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078 |||||| |||| | | |||| ||| ||| ||||| || || || || ||||| Sbjct 4492 GCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCG 4548 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| |||| |||||| Sbjct 4549 GTCAGGGTCTTCACAAAGATCTGCAT 4574 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || ||||||||||| || | || || | ||| ||||| | Sbjct 4596 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCGTCTTCCA 4654 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| |||||||||||||| | | || |||||||| || || | Sbjct 4655 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGA 4714 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || ||||| |||| | | |||| ||| ||| || || || || || || | Sbjct 4715 TCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCT 4771 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || |||||||| |||| |||||| Sbjct 4772 TGCCAGTTAGGGTCTTCACAAAGATCTGCAT 4802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152954393437297