Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5826 147 2e-30 seq15821 123 2e-23 >seq5826 Length=5185 Score = 147 bits (162), Expect = 2e-30 Identities = 176/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| |||||||| || | || ||||| ||| || ||| ||||| ||||||||||| || Sbjct 4572 CATGCCCCCTCTGAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 4631 Query 44167 -GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | |||| |||| ||||||||||| || |||||||||| | |||||| || | Sbjct 4632 AGACAAGGT-GCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG 4690 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | |||||||| ||| ||||| || | | |||| | |||||||| || Sbjct 4691 GGGGAATGCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCACTGGGC 4749 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||| || || ||||| || || ||||||||||| ||||| |||||| Sbjct 4750 TCCACCTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCATG 4803 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| |||||||| || | || ||||| ||| || ||| ||||| ||||||||||| || Sbjct 4800 CATGCCCCCTCTGAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 4859 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || ||||||||||| || || ||||| | | ||||||||||| Sbjct 4860 AGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGG 4919 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||| | | | |||||||| || || Sbjct 4920 AGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTC 4979 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 4980 CACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 5030 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||| | ||| || ||| |||||| ||||||||||| || | Sbjct 4348 CCACCCCTCAGGCGCAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4407 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | || ||||||||||| || || ||||| | | ||||||||||| ||| Sbjct 4408 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGA 4467 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||| | | | |||||||| || || || Sbjct 4468 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 4527 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || || ||||| || || ||||||||||| ||||| |||||| Sbjct 4528 TCCAGGGTGATTGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 4575 >seq15821 Length=35697 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || || ||||| || ||| || |||||||||||||| |||| Sbjct 940 CCACCCCGCAGGCGCAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCGGAC 881 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || || ||||||| | ||||||||| | || Sbjct 880 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 821 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||||| | | |||||||| || |||||| Sbjct 820 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 761 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 760 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 713 Score = 122 bits (134), Expect = 6e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||||| ||||| | || || ||||| || ||| || |||||||||||||| || Sbjct 488 CATGCCCCCCCTCAGGCGCAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTC 429 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || || ||| || | ||||||||| | Sbjct 428 AGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGTGCAGCCTCTGCTGATCAGG 369 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||||| | | |||||||| || || Sbjct 368 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 309 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||||| | || || ||||| || || ||||||||||| ||||| |||||| || Sbjct 308 CACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 254 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || ||| || || || ||| ||||| ||||||||||| || Sbjct 716 CATGCCACCTCTCAGGCGCAGCACGAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 657 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || ||||| || | | ||||||||| | Sbjct 656 AGACAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGATCAGG 597 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||||| | | |||||||| || || Sbjct 596 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 537 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || | || || ||||| || || ||||||||||| || || |||||| Sbjct 536 CACTTCAAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCATG 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359733268644519