Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq33652 161 1e-34 seq28363 105 1e-17 >seq33652 Length=99775 Score = 161 bits (178), Expect = 1e-34 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| |||||||| || ||||| ||| ||| || ||||| || |||||||| Sbjct 96521 ATGAGTCTAGTAGTCTGGAAGAGCTGCTCATCATCCCACTCAGGATGCTCCTGTTTCAGG 96580 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 96581 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCCGGG 96640 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || ||||||| | ||| || ||| || | | ||||| Sbjct 96641 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 96700 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || |||| || ||||||||||| || ||||||||| Sbjct 96701 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 96760 Query 9484 TG 9485 || Sbjct 96761 TG 96762 Score = 147 bits (162), Expect = 3e-30 Identities = 224/318 (70%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 94478 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 94537 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| || |||||||| || ||||||||| | |||| Sbjct 94538 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGTTTCCAGTACTCGGGGG 94597 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || |||||||| || || | ||| | || Sbjct 94598 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCACCAATCTCCACCATTG 94657 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | ||||| |||||||| || || |||||||| || | || || | |||||||||| Sbjct 94658 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCA 94717 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 94718 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 94777 Query 8588 TTATTAATAAAAAATAAC 8605 ||||| ||| || ||| Sbjct 94778 TTATTGGTAAGTAAAAAC 94795 >seq28363 Length=16454 Score = 105 bits (116), Expect = 1e-17 Identities = 212/315 (67%), Gaps = 11/315 (3%) Strand=Plus/Minus Query 8282 GGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATA 8341 || || |||||||| | |||| ||| ||| || ||| || || || || | Sbjct 6805 GGCACACGGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGTTTCTCGAGC 6746 Query 8342 GTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTAC 8401 | ||| |||| || ||| | || || ||||||| ||||||||||| ||||||||| Sbjct 6745 GATGCCGTCTTCACTATCTCAAAGCCAGTCGCTCCGCCAAAGGTGCTGGGTTTCCAGTAC 6686 Query 8402 CCCGGGGAGCAGATGACGTTC-------GCC----ATGAGGCCTTTGAGGGAGAACGGAG 8450 |||||||||||||| |||| ||| | || || || ||||||||||||| Sbjct 6685 TCCGGGGAGCAGATGGGGTTCCCGAGCAGCCCCGGAGCAGCCCCTTCAGGGAGAACGGAG 6626 Query 8451 CCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGA 8510 | || | ||| | ||||| || || || || | ||||| ||||||| || | || | Sbjct 6625 CTCCGATCTCTACCATGCTTTCTCCAAAAATCCCATTGGGTTGGGGCTTCTCGAGCAGCA 6566 Query 8511 ATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGA 8570 | || || | ||||| || |||| |||||| || || || || || || || Sbjct 6565 AGCCCAGATAAAACTCCAGCGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCCGCCT 6506 Query 8571 TCTCCTTTTCTCCTG 8585 |||| | ||||||| Sbjct 6505 TCTCTTCCTCTCCTG 6491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716351625017280