Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq15821 149 2e-30 seq5826 131 4e-25 >seq15821 Length=35697 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||||| ||| || | Sbjct 717 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGG--AGCCCAGTG 774 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||| ||||| || || || || |||| Sbjct 775 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 834 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || |||| || ||| Sbjct 835 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAACA 894 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||||| || ||||| ||||| Sbjct 895 TCCAAAAAGAATCCACCCTGCACCTTGT 922 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||||| ||| || | Sbjct 261 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGG--AGCCCAGTG 318 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||| ||||| || || || || |||| Sbjct 319 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 378 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||| || || ||||| |||||||| | || || | || || ||| Sbjct 379 AGAGGCTGCACTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACA 438 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||||| || ||||| ||||| Sbjct 439 TCCAAAAAGAATCCACCCTGCACCTTGT 466 >seq5826 Length=5185 Score = 131 bits (144), Expect = 4e-25 Identities = 165/222 (74%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || ||| Sbjct 4799 CAGATCTTTGTGAAGACCCTAACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 4742 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| ||||| || || || ||||||| Sbjct 4741 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAGC 4682 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | || ||||| || || || ||||| ||||| || | || |||| | || || ||| Sbjct 4681 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCAC-CTTGTCTGACTACAAC 4623 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || ||||| | || || | |||||| Sbjct 4622 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTCAGA 4581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202827315608758