Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5826 134 1e-26 seq15821 123 2e-23 >seq5826 Length=5185 Score = 134 bits (148), Expect = 1e-26 Identities = 165/223 (74%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| |||||||| ||||| ||||| || | ||||||| Sbjct 4585 AGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGC 4644 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| || || ||||| | ||| ||||| | ||||| || ||| Sbjct 4645 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 4704 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| || ||| |||| | || ||||| || | ||||||||||| Sbjct 4705 TTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAG 4760 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || || || ||||| || || ||||||||| Sbjct 4761 GGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCATG 4803 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| |||||||| ||||| ||||| || ||||||||| Sbjct 4813 AGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 4872 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| || || | ||| || || | |||| || ||| Sbjct 4873 CCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCC 4932 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 4933 TTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 4992 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| ||||| |||||||| || Sbjct 4993 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 5033 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 || || ||| ||||||||| ||||| ||||| || ||||||||| | || || |||||| Sbjct 4372 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 4431 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 ||||| ||||| || || | ||| || || | |||| || ||||||||| ||| || Sbjct 4432 TTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTA 4491 Query 41780 TGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTC 41839 ||| | | | ||||| || | ||| || |||| || || || || || ||| Sbjct 4492 GCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCGGTC 4551 Query 41840 AGCGTCTTTACGAAAATCTGCATG 41863 || ||||| || || ||||||||| Sbjct 4552 AGGGTCTTCACAAAGATCTGCATG 4575 >seq15821 Length=35697 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || ||||| ||| || || || ||||| |||||||| Sbjct 940 CCACCCCGCAGGCGCAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCGGAC 881 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||| | ||| || || | |||| Sbjct 880 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 821 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | ||||| || | ||||||| Sbjct 820 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 761 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || ||||| ||||| || || ||||||||| Sbjct 760 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 713 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| ||| |||||||| ||||| ||||| || || ||||| Sbjct 703 AGGCGCAGCACGAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGG 644 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| || || | ||||| || ||| Sbjct 643 CCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGATCAGGGGGAATGCCTTCC 584 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| || | |||||| || | || Sbjct 583 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTG 524 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || |||||||||||| Sbjct 523 ATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCATG 485 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| ||| || || || ||||| ||||| || |||||||| | || || Sbjct 466 ACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 407 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| ||| | ||| || || | ||||| || ||||||||| | Sbjct 406 AGCTGCTTGCCAGCGAAGTGCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 347 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| || | ||||||||| | || || || || Sbjct 346 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTG 287 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| || || ||||||||||| Sbjct 286 CCAGTCAGGGTCTTCACAAAGATCTGCATGTT 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461965321868400