Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq17756 149 8e-31 seq9648 116 5e-21 seq9152 86.0 8e-12 >seq17756 Length=1922267 Score = 149 bits (164), Expect = 8e-31 Identities = 198/275 (72%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | |||||||||||||||||||| | |||||||||||| Sbjct 1785958 GGGCACGCCGTCGGGGCCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCA 1786017 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | ||||||| || Sbjct 1786018 GACCGGGGACCAGATGATGTACTGAGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGG 1786077 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 ||||| |||||| ||||||| |||||| || || || | ||||| ||||| Sbjct 1786078 GAAGGGCAGCGCCTCTTTCAGGAAGGTGAAGAGAGGGTGCGCGTTCTTCCCGTTCACCTC 1786137 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||||||| | || || || |||| | | ||||| || ||||| || | || ||| Sbjct 1786138 GCACTTCTCGAACATGATGAAATTGGGCTTGTACCCGTTGCCGGGACGAACATACTCCAG 1786197 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 || ||| |||||| || || ||||||||||| Sbjct 1786198 CGAGAGCAGGATCTCCGCGCTCGTGGCGTTTTCCT 1786232 >seq9648 Length=278 Score = 116 bits (128), Expect = 5e-21 Identities = 120/155 (77%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || || ||||| || ||||| || ||||| ||||||| ||| | || Sbjct 55 TTACCTGGTAGCCAAATTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 112 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | ||||||| ||| | ||| ||||| ||||| |||||| | ||||||||||||| Sbjct 113 GCGGGCT-TGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTGGTGCCTCAGAGGGACG 171 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAG 83542 | |||||||||||||| | || |||||||| ||| Sbjct 172 CCACGTTCTCGATGAGGACCACGCGGCCCCGGAAG 206 >seq9152 Length=271 Score = 86.0 bits (94), Expect = 8e-12 Identities = 105/137 (77%), Gaps = 10/137 (7%) Strand=Plus/Minus Query 83228 TCGTCGCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCC 83282 |||||| ||||| |||||| |||| || ||| ||||||||| || || || || Sbjct 231 TCGTCGGCCGGCGCGGGCAGGTGAGCCT-TC--AGGTAGGCGAAGACGGGGTGGGTGTCC 175 Query 83283 TTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAG 83342 | || ||||| |||| |||||||| |||||| | ||||| ||||||||||| ||| | Sbjct 174 T-GC-CCGTTCACCTGGCACTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCCCCCCCCG 117 Query 83343 GACGGACGTGCTTCAGG 83359 | || |||||||||||| Sbjct 116 GCCGCACGTGCTTCAGG 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608650194120600