Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq18090 152 5e-32 seq18803 145 8e-30 seq18321 87.8 2e-12 >seq18090 Length=2644836 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 433437 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTAGAAGTTGAGCCCAGT 433378 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||| ||| | || || Sbjct 433377 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 433319 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 433318 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 433259 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| |||||||| ||| ||||| ||||||| || Sbjct 433258 CATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 433211 >seq18803 Length=1030202 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 327360 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 327301 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| ||| | || ||| Sbjct 327300 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 327241 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 327240 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 327181 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| |||||||| ||| ||||| ||||||| ||| Sbjct 327180 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGGC 327133 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 327588 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 327529 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| ||| | || ||| Sbjct 327528 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 327469 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 327468 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 327409 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| |||||||| ||| ||||| ||||||| ||| Sbjct 327408 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGGC 327361 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| |||| || || ||| Sbjct 327816 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGCCCAGT 327757 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || ||||| ||| | || ||| Sbjct 327756 GACACCATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 327697 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| |||| |||||||| ||||||||| Sbjct 327696 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 327637 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| |||||||| ||| ||||| |||| || ||| Sbjct 327636 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGGC 327589 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 328044 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 327985 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| ||| | || ||| Sbjct 327984 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 327925 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 327924 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 327865 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| |||||||| ||| ||||| |||| || ||| Sbjct 327864 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGGC 327817 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 328272 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 328213 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| ||| | || ||| Sbjct 328212 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 328153 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 328152 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 328093 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| |||||||| ||| ||||| |||| || ||| Sbjct 328092 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGGC 328045 Score = 122 bits (134), Expect = 9e-23 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| || ||||| ||| | || ||||| | || |||| | Sbjct 328424 TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTG 328365 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| |||||||| |||| |||||||| ||||||||||||||||||||| ||| Sbjct 328364 CTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCA 328305 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | |||||||| ||| ||||| |||| || ||| Sbjct 328304 CCCTGCATCTTGTGCTGCGCCTGAGAGGTGGC 328273 >seq18321 Length=7501628 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||| ||||| || || || ||||||| Sbjct 4159096 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTCTCGGGTTCCTTTGCTGCTATATTTT 4159037 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 4159036 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 4158977 Query 117162 ACGAGG 117167 |||||| Sbjct 4158976 ACGAGG 4158971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515095128776400