Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq18948 425 4e-114 seq18759 86.0 4e-12 >seq18948 Length=4301339 Score = 425 bits (470), Expect = 4e-114 Identities = 775/1122 (69%), Gaps = 16/1122 (1%) Strand=Plus/Plus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || ||| || || ||||| || |||| | |||||| || | Sbjct 433816 ATCAACTGCTCGGGGGTCGTCCGCGGGGATGAGAAAGCCATCCAGGAGGCCCAGCTCAGC 433875 Query 107583 AACCTGGAAGT---GAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATA 107639 |||||||| || ||| | |||| || ||| || || | | | ||||| ||| | Sbjct 433876 AACCTGGAGGTTGCGAACAGAAAG--GTTGCC-CTGACGCCTAGCGAGTACCTGAACGTG 433932 Query 107640 ACCAGAGACTGTGAGC-GCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAA 107698 || | ||||| ||| ||||||||| || |||||| ||||||||||||| | Sbjct 433933 ACGAAGGACTGC-AGCAGCTTCAAGGAGAGCCGGCGGTTCATTGAGTTCCCACTGAGCCA 433991 Query 107699 AGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTT 107758 || ||| ||| |||||||| |||||||| ||||| |||| || || || || | || Sbjct 433992 GGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACGACAAAATCGAGATGTT 434051 Query 107759 TGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGT 107818 ||| ||||| ||||| || | || ||||| |||||| | ||||| ||||| | || Sbjct 434052 TGAGCGGCTCCTGCGGTCCCTCTACGCCCCCCAGAACGTCTACTGCATCCACATTGACAG 434111 Query 107819 GAAGTCCCCAG-AGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 || ||||| | ||| ||| | ||||| || |||||| | ||||||||||||||| Sbjct 434112 CAACTCCCCGGCTGAC-TTCCAGGAGGCTGTGCGGGCCATCGTAGCCTGCTTCCCCAATG 434170 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 |||| |||| || ||| |||||| ||||||||||||||| | |||| || | Sbjct 434171 TCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGCCG 434230 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATA 107997 |||| ||||| ||| | ||| || | |||||| | | || ||| | ||| | || || | Sbjct 434231 ACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATACCGTGGCACTACATCCTCAACA 434290 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057 | || || || || |||||||| |||||||||||| |||| |||| ||||| |||||| Sbjct 434291 CCTGTGGCACCGATTTCCCCATCAAGACCAATGCCCAGATTGTCCGTGCCCTGAAGATGC 434350 Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117 || |||| |||||| |||||||| ||| || || | | || | |||||| Sbjct 434351 TGCAGGGGCGGAACAGCATGGAGTCAGAGAAGCCCTCGGCCTTGAAGCGGGAGCGCTGGC 434410 Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA-AGATGAAGGACCCTCCC 108176 | |||| | | || ||| | | | || || | || ||| ||| || || Sbjct 434411 AGTACCACCACGAAGTGGGGAAGTTCATCTCCCGGACAACCAGAGA-GAAACTGCCACCA 434469 Query 108177 CCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTC 108236 || | || | |||||||||||||| || || || | |||| | | || ||||| || Sbjct 434470 CCCCACAACTCCCCCATGTTCACAGGCAACGCGTACATCGTGGTCACGCGGGCCTTCGTG 434529 Query 108237 CAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTAT 108296 || || |||| | ||||| | | || | | || |||| |||||||||||| Sbjct 434530 CAGCACATCTTCAAGAACCCCACGGCGCAGCAGTTCCTCGAGTGGGCCAAAGACACCTAC 434589 Query 108297 AGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGGATGCCTGGCTCTG 108354 ||||| ||||| ||| ||||||||||||| | || ||| | ||| |||| ||| | | Sbjct 434590 AGCCCTGACGAGCACGTCTGGGCCACCCTCAACCGCATGCCCGGTG--TGCCGGGCGCCG 434647 Query 108355 TTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGT 108414 | || | ||||| || |||| ||||||| ||| | || | || ||||||| Sbjct 434648 TGCCCCAGAATGACAAGTTCCAGCTCTCGGACATGAACGCCCTGCCCCGCCTGGTCAAGT 434707 Query 108415 GGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCC 108474 ||||||||| ||||| || ||||| ||| ||||| || | |||||| | || | Sbjct 434708 GGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCCCTACCCGCCCTGCACCGGCCGGC 434767 Query 108475 ATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATC 108534 | | | | || ||||||| ||||||| || || || |||||| |||||| | || | Sbjct 434768 ACCAGCGCACCGTCTGCATCTACGGGGTGGGCGATTTGCCCTGGATGCTCCAGCAGCACC 434827 Query 108535 ACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAG 108594 |||||||||| |||||||| ||||| |||||| ||| || | | |||||| | || | Sbjct 434828 ACCTCTTGGCCAACAAGTTCGACCCCCTGGTGGACGATGCCGCCATCCAGTGCCTCGAGG 434887 Query 108595 AGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 || |||| || || | |||| |||| || | | ||| |||| Sbjct 434888 AGCACCTGCGCCACAGGGCCCTCTACGGCAGGGGACTCTGAG 434929 >seq18759 Length=16628039 Score = 86.0 bits (94), Expect = 4e-12 Identities = 227/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| |||||||| ||||| || | || Sbjct 10087107 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCGATAGTGGTTTATCACAAA 10087166 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | |||||||||||||| | ||||| | Sbjct 10087167 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 10087226 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| |||| | || || |||| || | || || Sbjct 10087227 CATGTTGACAAAAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 10087286 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | || || ||||| || ||| ||| Sbjct 10087287 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTATATGCTTCATGGAGCAGG 10087346 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 10087347 GTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 10087404 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || || || | ||||| || |||||||||| Sbjct 10087405 ACCTAATAAACCTCTGTGGCATGGACTTTCCTTTAAAGACCAA 10087447 Score = 86.0 bits (94), Expect = 4e-12 Identities = 194/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || ||||| | Sbjct 10087696 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA 10087755 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392 ||| || | | || || | ||| || | |||||| | | || ||||||| | Sbjct 10087756 -TCCCTGAAGTCCCAGGTGCAGTTTCTTCCAGTGTCAAGTACGATGTTTCTGACATGAAT 10087814 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGA--GGGAGATGTCAGCATGGGGGCGC 108450 || | |||||| | ||||||||||||||| || | || ||||| || || || | Sbjct 10087815 GCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATGTC--CAAAGGTGCAC 10087872 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 | || |||| ||| |||| | || | | |||| ||| |||| || |||| Sbjct 10087873 CCTACCCACCATGCAGTGGAGTTCACGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGACC 10087932 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 10087933 TAAACTGGATGCTACGAAACCACCACTTCTTTGCCAATAAGTTTGAC 10087979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348187029206610