Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq18321 120 4e-22 seq19211 111 2e-19 seq18753 111 2e-19 seq17757 96.9 5e-15 >seq18321 Length=7501628 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 4158971 CCTCGTCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 4159030 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || || ||||| || ||||| ||||| ||||||| Sbjct 4159031 TCAGCCAAAATATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCAACTGCAGCAAAGG 4159090 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 4159091 CAACCACTCTCTCACC 4159106 >seq19211 Length=6011973 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||||| ||||| |||||||| ||||||| || | || | Sbjct 3086425 CCTCATCTCTACTGATGAGCTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3086484 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 3086485 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3086544 Query 36300 C 36300 | Sbjct 3086545 C 3086545 >seq18753 Length=17751976 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 9450 AAAATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTT 9509 |||| |||||| ||| | |||| | |||||||||| ||| ||||| ||||||||| Sbjct 8299222 AAAAAAAAAATCATCAATATGACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTT 8299163 Query 9510 GATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGC 9569 || || | |||||||||||||| ||||||| || |||||||| || | || |||||| Sbjct 8299162 GACTGCAAGGTATATGCAGTCAGTCCAAGAAATACAGCAGTAGTAAGAGTAAAGGCTTGC 8299103 Query 9570 ATAACGACATGCACATCATAGAAA 9593 | |||| ||||||||||||| Sbjct 8299102 AAGACGATGGACACATCATAGAAA 8299079 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || |||||| | | | ||| || ||||| ||||||||||||||| Sbjct 8300550 TATTTTTTATTAAATGCTTCCAGTAAACGCAGCAGGTGTAAGAAGAGATTGATGATATCC 8300491 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 || |||| |||||| | || | | || |||||||| || | || || || || | Sbjct 8300490 AAATAGAGATTGATTGCAGCCAGGATGTACTCTTCAGGGGATAATTTGTGCATCAGCAAA 8300431 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||| ||||| | ||| || || ||||| | |||| | Sbjct 8300430 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCGGCAGCAGCAAACACCAAC 8300371 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 8300370 TCTATTGTCTCACT 8300357 >seq17757 Length=370366 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | || | ||||||| || || Sbjct 343402 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 343461 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 343462 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 343520 Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205 ||||| ||| ||||| | | | ||||| Sbjct 343521 TTCCAGGTAGATGGCAAAAGCCCCAGG 343547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658014303762600