Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq18321 123 3e-23 seq19211 120 4e-22 seq17757 102 1e-16 >seq18321 Length=7501628 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 4158971 CCTCGTCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 4159030 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || || |||||||| ||||| ||||| ||||||| Sbjct 4159031 TCAGCCAAAATATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCAACTGCAGCAAAGG 4159090 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 4159091 CAACCACTCTCTCACC 4159106 >seq19211 Length=6011973 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||||| ||||| |||||||| ||||||| || | || | Sbjct 3086425 CCTCATCTCTACTGATGAGCTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3086484 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 3086485 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3086544 Query 42207 C 42207 | Sbjct 3086545 C 3086545 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | || |||||||| || || || || || ||||| ||||| ||| Sbjct 3085132 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 3085191 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || ||||||||||| ||||| ||||| Sbjct 3085192 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 3085226 Score = 86.0 bits (94), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || ||| |||||||| || || || || | |||||| |||||||||||||| || ||| Sbjct 3088577 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 3088636 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTT 42428 || ||||| ||||| || || |||||||| | || || || | ||||||| Sbjct 3088637 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTT 3088688 >seq17757 Length=370366 Score = 102 bits (112), Expect = 1e-16 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||| Sbjct 343402 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 343461 Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 343462 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 343520 Query 72141 TTCCAAGTATATGGC 72155 ||||| ||| ||||| Sbjct 343521 TTCCAGGTAGATGGC 343535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670977581291400