Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq18090 172 1e-37 seq18803 150 3e-31 >seq18090 Length=2644836 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || |||||||| || |||||||| || ||||| || || | Sbjct 433220 AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 433279 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || ||||| |||||||||||| Sbjct 433280 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCC 433339 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||||||| ||| |||||||| | || ||||| |||||| Sbjct 433340 TTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCTAAGGTG 433399 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 433400 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 433437 Score = 149 bits (164), Expect = 1e-30 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || ||||| || || | ||||||||| | |||||| || || || || || || || || Sbjct 433490 TACTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGA 433549 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 ||||| ||||||||||| ||||| || ||||| ||||||||| ||| |||||||| Sbjct 433550 TCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTG 433609 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||||| ||||||||| || || || |||||||| ||||| ||||||||| Sbjct 433610 GGCTCAACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 433666 >seq18803 Length=1030202 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || |||||||| || |||||||| || || || || || | Sbjct 327143 AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 327202 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 327203 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 327262 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||| |||||||| | || || || | |||| Sbjct 327263 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTG 327322 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 327323 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 327360 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || |||||||| || |||||||| || || || || || | Sbjct 327371 AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 327430 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 327431 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 327490 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||| |||||||| | || || || | |||| Sbjct 327491 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTG 327550 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 327551 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 327588 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || |||||||| || |||||||| || || || || || | Sbjct 327827 AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 327886 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 327887 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 327946 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||| |||||||| | || || || | |||| Sbjct 327947 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTG 328006 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 328007 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 328044 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || |||||||| || |||||||| || || || || || | Sbjct 328055 AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 328114 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 328115 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 328174 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||| |||||||| | || || || | |||| Sbjct 328175 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTG 328234 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 328235 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 328272 Score = 136 bits (150), Expect = 7e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || |||||||| || |||||||| || || || || || | Sbjct 327599 AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 327658 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 327659 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 327718 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||| |||||||| | || || || | ||| Sbjct 327719 TTGTCCTGGATCTTCGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTG 327778 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 327779 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 327816 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || |||||||| || |||||||| || || || || || | Sbjct 328283 AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 328342 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 328343 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 328402 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 ||||| || ||||| |||||||| ||| |||||||| Sbjct 328403 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC 328440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921400461805800