Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18321 102 2e-16 seq17757 86.0 1e-11 >seq18321 Length=7501628 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||||||||| |||| || Sbjct 4159106 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTCTCGGGTTCCTTTGCT 4159047 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || ||||| Sbjct 4159046 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 4158987 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| ||||||| Sbjct 4158986 ATTAGCAGAGACGAGG 4158971 >seq17757 Length=370366 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||||||||| ||| ||||| |||| | |||||| || Sbjct 343407 CTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTC 343466 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| | | || | ||| ||||||| ||| | ||||| || |||| Sbjct 343467 TTTTCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGTTCCAG 343526 Query 245128 GTAGA 245132 ||||| Sbjct 343527 GTAGA 343531 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| || || | ||| ||||| ||| ||| || ||||||||| Sbjct 338060 ACCTGAAACTCTCCCGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATG 338119 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 || | ||||||| ||||| || || ||||| |||||||| || | || || Sbjct 338120 GATTCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAGG 338179 Query 244217 CTGTTCCTCACGCCGT 244232 ||||| || ||||||| Sbjct 338180 CTGTTTCTGACGCCGT 338195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944111791316400