Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq19211 120 3e-22 seq18321 105 8e-18 seq17757 102 9e-17 >seq19211 Length=6011973 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | || |||||||| || | |||||||| | ||||||||| | Sbjct 3086425 CCTCATCTCTACTGATGAGCTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3086484 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 3086485 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3086544 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 3086545 CTACTACACGTTCTCC 3086560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| || | || || | | |||||||||||||||||| |||||||| || || Sbjct 3088585 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 3088644 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 ||||| || || || ||||| | |||||||| || ||||||| Sbjct 3088645 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTT 3088688 >seq18321 Length=7501628 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| || || || | ||||||||||| || || || | Sbjct 4158971 CCTCGTCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 4159030 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || || ||||| || ||||| ||||| ||||| | Sbjct 4159031 TCAGCCAAAATATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCAACTGCAGCAAAGG 4159090 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 4159091 CAACCACTCTCTCACC 4159106 >seq17757 Length=370366 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| ||| | ||||||| ||| ||||| | Sbjct 335364 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCTGCAATGTGAATGT 335423 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || ||||||||||| || || ||||| || |||||||| | | ||| Sbjct 335424 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 335483 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | |||||||| ||||| ||||| | ||| || | ||| || || Sbjct 335484 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGG 335532 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 47902 CAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGA 47961 || ||||||||| | | ||||| | | |||||| | ||| ||||| | ||||||| Sbjct 342030 CACCTACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGA 342089 Query 47962 TAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAG 48021 | || ||||| || || ||||| | ||| || | ||| ||||| ||||| | | Sbjct 342090 TGGTCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACG 342149 Query 48022 GTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 |||| || || ||| |||||||||||||||||| Sbjct 342150 GTGTGCCGGTCTCTGTCTGAGATTCAATGATAG 342182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561973437174600