Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq17681 125 6e-23 seq18803 86.0 5e-11 >seq17681 Length=1256074 Score = 125 bits (138), Expect = 6e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| ||||| |||||||| || || || ||||| Sbjct 763450 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGCCAGGCTACA 763509 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || ||||| || || |||||||| || || || ||| Sbjct 763510 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCGACAGCT 763569 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 |||||| | || ||||| || || ||| Sbjct 763570 GCTGCAATAGCCTATGGTCTGGACAAA 763596 Score = 87.8 bits (96), Expect = 1e-11 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||||||||| |||||||| | || ||||| || |||||||| || || ||||| ||||| Sbjct 765175 AGGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGC 765234 Query 552566 CAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||||| || |||||||| ||||| ||||| Sbjct 765235 CAATGGCATCCTGAATGTGTCTGCTGTGGATAA 765267 >seq18803 Length=1030202 Score = 86.0 bits (94), Expect = 5e-11 Identities = 154/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || || || || |||||||| ||||| ||| | ||| || ||||| |||| || | Sbjct 327596 CTCAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGACAGGG 327653 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | | ||||| || || || || ||||| || || || ||||||||||| ||||| | Sbjct 327654 TGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGC 327713 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431 |||| || || || || || || || |||||| || ||| || | | |||| Sbjct 327714 CTTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGA 327773 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| | || || ||||| || || || || || || ||||| Sbjct 327774 GAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 327816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028277179914850