Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq18759 232 8e-56 seq18948 131 2e-25 seq18018 84.2 3e-11 >seq18759 Length=16628039 Score = 232 bits (256), Expect = 8e-56 Identities = 650/991 (66%), Gaps = 9/991 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 10088031 TGTGTCGCAAATACTCTTCCAAACATTTTACCGCAAAAGGGTCAACATCAGTGTCAAACT 10087972 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| | |||||| ||| || | Sbjct 10087971 TATTGGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTTAGGTCTCCTACCCCAAAAA 10087915 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| || || |||| || ||||| | || ||||| | || || Sbjct 10087914 CACAGACAGAGCGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACATGT 10087855 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || |||| Sbjct 10087854 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCGT 10087795 Query 160285 ATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCA 160342 | ||| ||| | || | ||| ||||| || || | || || | ||| | || ||||| Sbjct 10087794 ACTTG-ACA-CTGGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCA 10087737 Query 160343 CAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT 160402 ||||| || || |||||||| ||||| || | ||| || ||||||| ||| || Sbjct 10087736 CAGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCT 10087677 Query 160403 GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 | | | || || | |||| | || ||||| || || || || || || Sbjct 10087676 GCTTTCTAATATGTATTCTACAAATCTTCTGCTAACTACAAAATAAGCACTACCAGAAAA 10087617 Query 160463 TATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 || || | | ||| || | |||||| || ||||| | || | Sbjct 10087616 AATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTGTGCCTGTGTTCTTTATTTTACCATC 10087557 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 10087556 AATAATCTCATGATGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTC 10087497 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 10087496 CAAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTAA 10087437 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 |||||||| | || || | |||||| | ||| ||||| || | || || || Sbjct 10087436 AGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAG 10087377 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || |||| Sbjct 10087376 ATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTC 10087317 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822 || | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 10087316 TAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAA 10087258 Query 160823 GAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881 || | || | | |||| ||| || || | ||| || | |||||||| || |||| Sbjct 10087257 AAAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGA 10087198 Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941 | | || || | || || | |||||| || || |||| | ||| || ||||| || | Sbjct 10087197 TTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATCGAGTAAGCAA 10087138 Query 160942 TCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAA 161001 | ||||| || | || || || || | | | | ||| || | |||||| | | Sbjct 10087137 TTGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTCCTAGTCTTGGTGA 10087078 Query 161002 AATAATCACAATCCCGCGTCATGTTGATATA 161032 | | |||| ||| |||||||| ||||| Sbjct 10087077 AGGAGGCACAGTCCGCTGTCATGTTAATATA 10087047 >seq18948 Length=4301339 Score = 131 bits (144), Expect = 2e-25 Identities = 237/346 (68%), Gaps = 3/346 (1%) Strand=Plus/Minus Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103 ||||| ||||| || || || || || |||| |||| |||| || |||||| Sbjct 434903 CTGTGGCGCAGGTGCTCCTCGAGGCACTGGATGGCGGCATCGTCCACCAGGGGGTCGAAC 434844 Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163 || || || || || ||||| | ||| || |||||| ||| || || |||| | Sbjct 434843 TTGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGGCAAATCGCCCACCCCGTAG 434787 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 | |||||||| || |||| |||| |||| |||||||| | || || || | Sbjct 434786 ATGCAGACGGTGCGCTGGTGCCGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGCTGGTG 434727 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283 || || || |||||||||||| || | | || | || | |||||| ||| | | Sbjct 434726 TCGCCCTCCAGGTACTGCCACTTGACCAGGCGGGGCAGGGCGTTCATGTCCGAGAGCTGG 434667 Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || |||| ||||| || || || |||||||| || | ||||||||||| Sbjct 434666 AACTTGTCATTCTGGGGCACGGCGCCCGGCACACCGGGCATGCGGTTGAGGGTGGCCCAG 434607 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 | ||| ||||| |||||||| ||||| || | ||| || | ||||| Sbjct 434606 ACGTGCTCGTCAGGGCTGTAGGTGTCTTTGGCCCACTCGAGGAACT 434561 >seq18018 Length=6850713 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 176201 GTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTC 176260 ||| || |||| ||| | || || || | ||||||| | | || || | || ||| Sbjct 2907158 GTACATCTTGTTATTTTTGTCAAGCATCAGAAGATATTCTGCCAGCTCTCTGGGGGAGAG 2907099 Query 176261 ATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGA 176320 | |||| | ||||||||||| | || || ||||||||| || ||||| |||| |||||| Sbjct 2907098 AAAATCTTCCACATGTATAAAAGAGTCTGCTGGAATGTAATTCTCATAGTTTTCTCTGGA 2907039 Query 176321 GGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGCG--GTAGATCTTTTCTGAG 176378 || || | || | |||||| | | || | | ||||| ||| | || || | Sbjct 2907038 AGGGCCCAGTACAACTGGTACTGATCCAGCCA--GAAGAGCGTTGTAAAGTTTCTCAGTA 2906981 Query 176379 ATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425 ||||| || |||| ||||| |||||||| | | ||||| || || Sbjct 2906980 ATGTAATCTTTGTGGATTGAATTTTCAAAGGAAAGGTAGAATTTGCA 2906934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577080198401400