Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq18759 143 3e-29 seq18018 134 2e-26 seq18948 95.1 1e-14 >seq18759 Length=16628039 Score = 143 bits (158), Expect = 3e-29 Identities = 578/903 (64%), Gaps = 22/903 (2%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || || || || || || || || ||||| || || ||||| Sbjct 10087942 ATCCAGTTTAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACGTGAACTCCACTGCAT 10087883 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | || || || || |||| |||||||| || ||||| Sbjct 10087882 GGTGGGTAGGGTGCACCTTTGGACATGTCACCTTCAAAGTACTGCCACTTGACAAACCTG 10087823 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACTG-ACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || ||||||||| |||||| | | || || || || || Sbjct 10087822 GCCAGTGCATTCATGTCAGAAACATCGTACTTG-ACACTGGAAGAAACTGCACCTGGGAC 10087764 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || |||||||||| || ||||| || || || || || | Sbjct 10087763 TTCAGGGATTCTCTGAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGC 10087704 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCT 162455 |||||| ||||||| | | |||| | | || ||||| || | || Sbjct 10087703 CCACTCAATGAACT---TAAGTATTTTGCTGCTTTCTAATATGTATTCTACAAATCTTCT 10087647 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | ||| || || ||||||||||| | || | | | ||| || | | ||| Sbjct 10087646 GCTAACTACAAAATAAGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTTGTTT 10087587 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || ||||| || | || || | | | | || || ||||||| | Sbjct 10087586 GTCTGTGCCTGTGTTCTTTATTTTACCATCAATAATCTCATGATGTTTTTTCCACCTTAC 10087527 Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 ||| || || || | ||| || || | ||||| ||| | ||| | Sbjct 10087526 TTCTTTA----TAAACAGGCATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTT 10087471 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | | | || || || | |||||||| | |||||||| |||| ||||| || | Sbjct 10087470 TTAATTTCTCTACTATTTCCTGGTTGGTCTTTAAAGGAAAGTCCATGCCACAGAGGTTTA 10087411 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | |||||||| || || || ||| ||||| | | ||||| | || |||| Sbjct 10087410 TTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCT 10087351 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | || | ||||| || || || || || ||||| ||| ||| | ||||||||| | Sbjct 10087350 GCACCCTGCTCCATGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAAGACATTAT 10087291 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTAT 162868 | ||||| || ||||| ||| |||| || || | || | || || ||| | | Sbjct 10087290 CAAAACATGAGACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGT 10087234 Query 162869 CTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACA 162928 | || || | |||||| | |||||||||||| ||||| | || || | ||| || | || Sbjct 10087233 CAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCA 10087174 Query 162929 TCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGAC 162988 |||| || || || | ||||| || || || || || || || || || || || | Sbjct 10087173 TCTCAATTTTGTGATAAACCACTATCGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGC 10087114 Query 162989 TGAGAGACCCTGTAAAGTACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGT 163048 |||||| | ||| ||| || | | | || | ||||||||| | ||||||| Sbjct 10087113 TGAGAGGTTCCATAATGTATTTCCTAGTCTTGGTGAAGGAGGCACAGTCCGCTGTCATGT 10087054 Query 163049 TAA 163051 ||| Sbjct 10087053 TAA 10087051 >seq18018 Length=6850713 Score = 134 bits (148), Expect = 2e-26 Identities = 399/606 (66%), Gaps = 11/606 (2%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | ||| || || |||| |||| | || | |||| Sbjct 2907118 GCCAGCTCTCTGGGGGAGAGAAAATCTTCCACATGTATAAAAGAGTCTGCTGGAATGTAA 2907059 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 2907058 TTCTCATAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGAGCG 2906999 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || |||| | || || ||||| | || |||||| Sbjct 2906998 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAATTTTCAAAGGAAAGGTAGAAT 2906939 Query 177126 TTACAGGAAGATAGTAGCGGGA-TGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 || || | ||| | ||| ||| | |||| | ||| | ||| ||||| | | | Sbjct 2906938 TTGCAAGTAGAGA-TAGTTGGAATCAAGTTTTTATCATTGACATAGTCTCCAAAGGCTTG 2906880 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||||| ||| || || |||| ||| || ||||| ||| || || || || ||| Sbjct 2906879 TCCGTAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCGT 2906821 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGAT 177303 | || |||||| || || || ||||| || || || || ||| || || | Sbjct 2906820 GCTCAGGGTTCCAGTTACTCACAACCCAACAGACCAAGTTTTCCTTACTTGGCAC----T 2906765 Query 177304 TCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAG 177362 || | ||| | | | | | || | | | | ||||| ||||| |||||||| || Sbjct 2906764 TCAAATGTAAAGGAACTTGTACCGACCATCATGAAGCCATAAGGCACCTGAATATCTGAA 2906705 Query 177363 TCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCT-TGTTTGAAGGGGCT 177421 || || | ||||| | || || || || |||| ||| || || | ||| || | | Sbjct 2906704 TCACGCCGATACGTCAGGGTCAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGAG-T 2906646 Query 177422 GTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGT 177481 | | | || || || ||||||||||| |||||||| || || | ||| |||| || | Sbjct 2906645 ATGAGTTGGAGACTCCAAGTTCATCCAAATCCACTTCTGGAATGGTGGCCTGGCTTGCTG 2906586 Query 177482 AGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTT 177541 ||||| | || |||| ||| || || ||||| |||| || || |||| || | | Sbjct 2906585 AGGTAAATTAGTCAGATCCCAACTAATGTCCCTGTGATGAATGAGAACAGCATGGGATCT 2906526 Query 177542 GTAATA 177547 || ||| Sbjct 2906525 GTTATA 2906520 >seq18948 Length=4301339 Score = 95.1 bits (104), Expect = 1e-14 Identities = 238/357 (67%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 162630 CTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATT 162689 |||||| ||| || |||| ||||||||| | ||| || |||||||| ||| || Sbjct 434346 CTTCAGGGCACGGACAATCTGGGCATTGGTCTTGATGGGGAAATCGGTGCCACAGGTGTT 434287 Query 162690 AATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGG 162748 | | || | |||| | | | || | | ||| ||||| | ||||| || |||| Sbjct 434286 GAGGATGTAGTGCCACGGTATGGGGC-TCTGCAACAGGTCCTGCATGCAGTTGAGGTCGG 434228 Query 162749 CCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACAT 162808 |||| | || ||| || || || || || | |||| | | || |||||||||| Sbjct 434227 CCTGCAGCCGGGACCAGGAGGCATAGACCACCTTTTCCAGGCGGCTAGCCACAAAGACAT 434168 Query 162809 TGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCT 162866 || ||| || | || || || ||| ||| ||| || | || | || || Sbjct 434167 TGGGGAAGCAGGCTACGATGGCCCGCACAGCCTCCTGGAAGTCAGCCGGGGAG--TTGCT 434110 Query 162867 ATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAA 162926 || | ||| | |||||| | ||||| |||||||||| || || ||| | | ||| || Sbjct 434109 GTCAATGTGGATGCAGTAGACGTTCTGGGGGGCGTAGAGGGACCGCAGGAGCCGCTCAAA 434050 Query 162927 CATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 |||||| || || | ||| | || || || || || ||||||||||| |||||||| Sbjct 434049 CATCTCGATTTTGTCGTGGATGACCATGGAGTAGGCGATGGGGAACTCTGCCTCCTC 433993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578292706344000