Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq18803 170 2e-37 seq18090 152 6e-32 >seq18803 Length=1030202 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 327360 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 327301 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 327300 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 327241 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 327240 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 327181 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||| || | ||||| Sbjct 327180 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 327134 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 327588 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 327529 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 327528 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 327469 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 327468 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 327409 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||| || | ||||| Sbjct 327408 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 327362 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||| ||||||||| | || Sbjct 327816 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGCCCAGT 327757 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 327756 GACACCATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 327697 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || ||||| | ||||| || Sbjct 327696 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 327637 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||| || | ||||| Sbjct 327636 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGG 327590 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 328044 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 327985 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 327984 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 327925 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 327924 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 327865 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||| || | ||||| Sbjct 327864 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGG 327818 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 328272 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 328213 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 328212 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 328153 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 328152 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 328093 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||| || | ||||| Sbjct 328092 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGG 328046 Score = 113 bits (124), Expect = 5e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 27456 TGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 |||| | |||| | ||||| ||| | ||||| || || ||||||||||| || ||||| Sbjct 328450 TGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCC 328391 Query 27516 TCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGC 27575 || || |||||| | || || |||||||| ||||| || || || | || ||||| | Sbjct 328390 CCCTGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTC 328331 Query 27576 AGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || |||| ||||| ||||| || ||||| || |||| || | ||||| Sbjct 328330 TGACTACAACATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGG 328274 >seq18090 Length=2644836 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || | || |||||| | || Sbjct 433437 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTAGAAGTTGAGCCCAGT 433378 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 433377 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 433318 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 433317 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 433258 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||| || | ||||| Sbjct 433257 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 433211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570173062126800