Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq18948 197 2e-45 seq18716 147 3e-30 >seq18948 Length=4301339 Score = 197 bits (218), Expect = 2e-45 Identities = 609/930 (65%), Gaps = 18/930 (2%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| ||| |||| ||||| |||||||||||||| || || |||||| |||| Sbjct 433981 CCACTGAGCCAGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACGACAAA 434040 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||||||| ||||| |||||| || || |||||||||| |||||| |||||||| || Sbjct 434041 ATCGAGATGTTTGAGCGGCTCCTGCGGTCCCTCTACGCCCCCCAGAACGTCTACTGCATC 434100 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGG-GGC-GTCTCGGCCATCGCCAGGT 13848 ||| | ||| ||| ||| | || ||| | || ||| || |||||||| | Sbjct 434101 CACATTGACAGCAACTCCCCGGCTGACTTC--CAGGAGGCTGTGCGGGCCATCGTAGCCT 434158 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 ||||||| || || |||| ||| ||| | | ||||| || | ||||||| | Sbjct 434159 GCTTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCC 434218 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968 | ||||||||||||||| ||||||| ||||||| |||| | |||| | Sbjct 434219 GGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATACCGTGGCACT 434278 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 || | |||||| || || | || ||||| |||||||||| |||| || || | Sbjct 434279 ACATCCTCAACACCTGTGGCACCGATTTCCCCATCAAGACCAATGCCCAGATTGTCCGTG 434338 Query 14029 CGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCCCAACCACAA 14086 | |||||| ||| || |||| | ||||| || || | | | | | || Sbjct 434339 CCCTGAAGATGCTGCAGGGGCGGAACAGCATGGAGTCAGAGAAGCCCT--CGGCCTTGAA 434396 Query 14087 GCTGCACCGC-ATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCG 14145 || | | ||| ||| | | |||| |||| | | | | || |||| Sbjct 434397 GCGGGAGCGCTGGCAGTACCA-CCACGAAGTGGGGAAGTTCATC-TCCCGGACAAC---- 434450 Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205 ||| | || || || || | || |||||| || | || ||||| ||| | | Sbjct 434451 -CAGAGAGAAACTGCCACCACCCCACAACTCCCCCATGTTCACAGGCAACGCGTACATCG 434509 Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265 |||||| |||| |||||| | | || ||||| || ||| | | | || | Sbjct 434510 TGGTCACGCGGGCCTTCGTGCAGCACATCTTCAAGAACCCCACGGCGCAGCAGTTCCTCG 434569 Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325 | ||| | | ||||| |||||||| ||||||||| | ||||||||| | | | ||| Sbjct 434570 AGTGGGCCAAAGACACCTACAGCCCTGACGAGCACGTCTGGGCCACCCTCAACCGCATGC 434629 Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCA 14385 ||| ||| || | | ||| | | ||||| | | |||||||||| ||| Sbjct 434630 CCGGTGTGCCGGGCGCCGTGCCCCAGAATGACAAGTTCCAGCTCTCGGACATGAACGCCC 434689 Query 14386 AGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACC 14445 | | | | ||||||||||| ||| ||||| || | || || || || | |||| Sbjct 434690 TGCCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCCCTACC 434749 Query 14446 CGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGT 14505 |||| ||| |||| ||| | | || ||||||||| |||| ||||| || | Sbjct 434750 CGCCCTGCACCGGCCGGCACCAGCGCACCGTCTGCATCTACGGGGTGGGCGATTTGCCCT 434809 Query 14506 GGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTTC 14564 || || ||| | | ||||| || ||||||||||||||| | | |||||| | Sbjct 434810 GGATGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGACCCCCTGGTGGACGATGCC 434868 Query 14565 GCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||| | | || || || ||| || ||||| Sbjct 434869 GCCATCCAGTGCCTCGAGGAGCACCTGCGC 434898 >seq18716 Length=10863315 Score = 147 bits (162), Expect = 3e-30 Identities = 264/381 (69%), Gaps = 16/381 (4%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATG 13739 || |||| || || ||||| |||||| || ||| || |||||| |||||| Sbjct 4804844 GAGGAGGCCGCCTTCCCCATTGCCTACG---TCATGACCCTGCACAAGGAGTTCGAGACC 4804900 Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 |||||||| ||| | ||||| | ||| || || ||| |||||||| |||| |||||| Sbjct 4804901 TTCGAGCGGCTCTTCAGGGCGGTGTACATGCCCCAAAACATCTACTGCATCCATGTGGAC 4804960 Query 13800 TCCAAGTC--CGGCGACGAGTTCATCCGG--GGCGTCTCGGC-CATCGCCAGGTGCTTCC 13854 ||||| | |||| | | ||||| |||| |||| | | | | ||||||| Sbjct 4804961 GCCAAGGCGCCGGCCCC-----CTTCCGGCAGGCGGTGCGGCGCCTGGTGGGCTGCTTCC 4805015 Query 13855 CTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGC 13914 | || | ||| ||| |||| | | ||||| |||||| | ||| ||| Sbjct 4805016 CCAATGCCTTCCTCGCCTCCCGGGCGGAGCGGGTGGTCTACGGCGGCGCCTCCCGCCTGC 4805075 Query 13915 AGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGC 13974 |||||||||| ||||||| ||||||| ||||| |||| ||| | ||||||| Sbjct 4805076 GGGCCGACCTCCACTGCATGAGGGACCTGCTGGCCTCGGCCGTGCCCTGGCGCTACCTGC 4805135 Query 13975 TCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGA 14034 ||||| ||||| ||||||||| | |||||||||| ||||||||| ||| ||||| Sbjct 4805136 TCAACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCCGGCTGCTGA 4805195 Query 14035 AGGCCCTGGGCGGCAAGAACG 14055 ||| ||| || || ||||||| Sbjct 4805196 AGGGCCTCGGGGGGAAGAACG 4805216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658580567366400