Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq18803 179 9e-40 seq18090 158 3e-33 >seq18803 Length=1030202 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | ||| ||| Sbjct 327605 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCT 327664 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 327665 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 327724 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | ||||||||||||||||| ||| Sbjct 327725 TGGATCTTCGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTC 327784 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 327785 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 327816 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | ||||||| Sbjct 327149 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 327208 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 327209 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 327268 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | |||||||| || ||||| ||| Sbjct 327269 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 327328 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 327329 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 327360 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | ||||||| Sbjct 327377 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 327436 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 327437 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 327496 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | |||||||| || ||||| ||| Sbjct 327497 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 327556 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 327557 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 327588 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | ||||||| Sbjct 327833 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 327892 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 327893 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 327952 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | |||||||| || ||||| ||| Sbjct 327953 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 328012 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 328013 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 328044 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | ||||||| Sbjct 328061 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 328120 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 328121 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 328180 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | |||||||| || ||||| ||| Sbjct 328181 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 328240 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 328241 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 328272 Score = 127 bits (140), Expect = 5e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | ||| ||| Sbjct 328289 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCT 328348 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 328349 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 328408 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 |||||||| || || || || ||||||||| Sbjct 328409 TGGATCTTGGCCTTGACATTCTCAATGGTGTCA 328441 >seq18090 Length=2644836 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 433226 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 433285 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || |||| |||||||||||| Sbjct 433286 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 433345 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || ||||||||| | ||||| || | ||||| ||| Sbjct 433346 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCTAAGGTGATGGTC 433405 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 433406 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 433437 Score = 127 bits (140), Expect = 5e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| | |||||||||||||||||||| || ||||| || | || || || || ||| Sbjct 433499 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 433558 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | ||||| |||||||||||||| || ||||| || ||||||||| | ||||| Sbjct 433559 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACT 433618 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || || || ||||| || || | ||||||||| Sbjct 433619 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 433668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158865883251725