Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq17753 98.7 8e-16 seq19178 87.8 1e-12 >seq17753 Length=632086 Score = 98.7 bits (108), Expect = 8e-16 Identities = 122/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 || |||||||||||||| || || || || |||| || ||||| || ||| |||| ||| Sbjct 179138 AAGTGCCTCCACTGGAAACCATAAACTGGGCCCAAATCCCCCTCCTCTCTGGTGCT-GAA 179080 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| ||||| | || || || || ||||| ||||| || ||||| | Sbjct 179079 ACCCTGCTTATCCAGGAAGTCACGTGATCCATTAGCATCCCAAATCTTCACACCCTTTGC 179020 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||||||||||| ||||| || || || || || ||||| Sbjct 179019 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 178980 >seq19178 Length=2974754 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | | ||| | |||||| || || Sbjct 166709 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 166768 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||| | | ||||| |||||| Sbjct 166769 ATGGAGAACCAGGTTTTTTTACCCATTATTAGGGCATTCTGTTTACCT 166816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406067836053790