Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq19211 113 4e-20 seq18321 107 2e-18 >seq19211 Length=6011973 Score = 113 bits (124), Expect = 4e-20 Identities = 106/134 (79%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| | ||||| || || || ||||||||||| || | ||| |||||||| || Sbjct 3086418 ATTCATACCT-CATCTCTACTGATGAGCTCGTTAGAAAAAGTGAGTCCAGGCATTAATCC 3086476 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || |||||||| || | ||||| || ||||||||||| || ||||| || || Sbjct 3086477 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGC 3086536 Query 4682 GGCAAACGCTACTA 4695 ||||| ||||||| Sbjct 3086537 TGCAAAAGCTACTA 3086550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || || |||||||| |||||||||||||| || ||| Sbjct 3088586 TCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCA 3088645 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 ||||| || || || || || | ||||||||| | ||| |||| Sbjct 3088646 ATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTT 3088688 >seq18321 Length=7501628 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || || || || | ||| ||||| | || ||||| || Sbjct 4158973 TCGTCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 4159032 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || || ||||| |||||||| || || ||||| || Sbjct 4159033 AGCCAAAATATAGCAGCAAAGGAACCCGAGAAGAAGATGCCTTCAACTGCAGCAAAGGCA 4159092 Query 4692 AC 4693 || Sbjct 4159093 AC 4159094 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| | |||| || | |||||| ||||| || || ||||||||||||||||| |||| || Sbjct 4163862 AAAGCCTTCTCACCAGGTTTTCATTTACGATTCCATCACTGGCTGCAAAAAATGCCAGAA 4163921 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 |||| || |||||||| | ||| || | || || || |||||||| || | || || | Sbjct 4163922 CATGGGAGATAAAGTATTTTTCATCTGCTTTGAGCTTGTTCCAGTGAGGAAGGTCCTTTG 4163981 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 4163982 ACAAATCAAC 4163991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426949332090245