Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pygoscelis_20adeliae_20[refseq_20GCF_5F000699105.1_202014-06-06] 19,265 sequences; 1,216,617,519 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq18961 154 2e-32 seq19166 91.5 2e-13 >seq18961 Length=2182706 Score = 154 bits (170), Expect = 2e-32 Identities = 222/309 (72%), Gaps = 3/309 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || |||||||| || || ||| | |||| || ||| | | || Sbjct 2101526 GGAAAGCAGTGAAAGGACACCCTTTCACATTGTTGCAGATAAGCTTCTGTAAGGAGGCAG 2101467 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| ||||||||||| |||||||||||| | |||| Sbjct 2101466 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCAGGGG 2101407 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || ||||| || || || | ||| | || Sbjct 2101406 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATTG 2101347 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527 | ||||| |||||||| || || |||||||| || ||||| || | |||||||||| Sbjct 2101346 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCTGGGTACAGCTCC 2101288 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586 | ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 2101287 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 2101228 Query 8587 TTTATTAAT 8595 ||||| || Sbjct 2101227 GTTATTGAT 2101219 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||| ||||| ||| ||| |||||||| || ||||||| Sbjct 2099483 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCCGTTTCAGG 2099424 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 2099423 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 2099364 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || ||| || | | ||||| Sbjct 2099363 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 2099304 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| |||||| |||| || ||||||||||| || | |||||| Sbjct 2099303 TAGATCATCTCTGCCTGAGTGTCTTTCACCGTTGGTGGATACATTTCTCCATTTATCATC 2099244 Query 9484 TG 9485 || Sbjct 2099243 TG 2099242 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || |||||||| || | || || || || | |||| ||| Sbjct 2097562 ACCTTTAACACCCATTGGTGTTGGACAGTCAAGTCCTACTGGCGGAAGGTTTCTTGTGTA 2097503 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 |||||| |||||||| |||||||||||||| ||| || || ||||| || || Sbjct 2097502 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCATTATTGTAAATTGG 2097443 Query 10030 AGGGCTGTCAATCAAATCGGATCT 10053 |||||||||||||||| ||||| Sbjct 2097442 CGGGCTGTCAATCAAATGTGATCT 2097419 >seq19166 Length=756702 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 |||| ||||| || ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 697108 CTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 697167 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| |||||||| || | ||| | ||||| || || || || | ||||| Sbjct 697168 CCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCTCCAAAAATACCATTGGGTT 697227 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 |||| || || | || || || || | ||||| ||| || | |||||| || || Sbjct 697228 GGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAG 697285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716704167105600