Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= AC_000006.1 Length=35100 Score E Sequences producing significant alignments: (Bits) Value seq171425 232 1e-56 seq169466 161 2e-35 seq170248 123 6e-24 seq170088 80.6 6e-11 >seq171425 Length=537 Score = 232 bits (256), Expect = 1e-56 Identities = 312/418 (75%), Gaps = 20/418 (5%) Strand=Plus/Plus Query 6267 CCGCGCAGGGGCTCGTTAGTCCAGCAGAGTCTGCCGCCCTTGCGCGAGCAGAACGGGGGC 6326 ||||| ||| ||||||| ||||||||||| | ||||||||||||||||||||| || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6327 AGCACATCAAGCAGATGCTCGTCAGGGGGGTCCGCATCGATGGTGAAGATGCCGGGACAG 6386 || || ||| | |||||| |||||||| || || | ||| |||| ||||| ||| Sbjct 70 AG-GGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGG-CAG 127 Query 6387 -AGTTTCTTGTCAAAATAGTCTATTTTTGAGGATGCAT-CA--TCCAAGGCCATCTGCCA 6442 || | ||| || |||||||| || | || | | || || | ||| |||||| Sbjct 128 CAGGCGCGCGTCGAAGTAGTCTATCTT---GCATCCTTGCAAGTCTAGCGCCTGCTGCCA 184 Query 6443 CTCGCGGGCGGCCATTGCTCGCTCGTAGGGGTTGAG-GGGCGGACCCCACGGCAT-GGGA 6500 |||||||||| | || |||||||| |||||||| ||| |||||||| ||||| ||| Sbjct 185 TGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGG 244 Query 6501 TGCGTGAGGGCGGAGGCGTACATGCCGC-AAATGTCGTAAACATAGA-TGGGCTCCGAGA 6558 || ||||| ||||||||||||||||||| ||||||||||||| |||| |||||| || Sbjct 245 TGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGA 304 Query 6559 AGATGCCGATGTTGGTGGGATAACAGCGCCCCCCGCGGATGCTGGCGCGCACGTATTCAT 6618 || || | | || || || || | || |||||||||||||| |||||||| || | Sbjct 305 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGT 364 Query 6619 ACAACTCGTG-CGAGGG--GCCAAGAAGG--CCGGGGCCGAAATTGGTGCGCTGGGGC 6671 | | ||||| |||||| ||| || ||| | ||| |||| || ||| |||||| Sbjct 365 ATAGTTCGTGCCGAGGGGAGCCGAGGAGGTTCGGGGACCGAGGTT--TGCCTTGGGGC 420 >seq169466 Length=306 Score = 161 bits (178), Expect = 2e-35 Identities = 202/275 (73%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 14090 AATGGCGTGCTGGAGAGCGATATT-GGAGTCAAGTTTGACAGCAGAAATTTCAAGCTGGG 14148 || || || ||||| ||||| | || || |||||||||| | | || |||| ||||| Sbjct 294 AACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGGG 235 Query 14149 CTGGGACCCTGTGACCAAGCTGGTGATGCCAGGG-GTCTACACCTACGAGGCCTTTCACC 14207 | ||||| || || || || ||||| | || || || |||| ||||| || | Sbjct 234 GTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCTTCCATC 175 Query 14208 CGGACGTGGTGCTGCTGCCGGGCTGCGGGGTGGACTTCACAGAGAGCCGCCTGAGCAACC 14267 | ||| | | ||||||||| ||||||||||||||| | ||||||||||||||| Sbjct 174 CAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAACT 115 Query 14268 TCCTGGGCATTCGCAAGAAGCAACCTTTCCAAGAGGGCTTCAGAATCATGTATGAGGATC 14327 | ||||||| |||||| |||||| ||||| |||||||| || |||| || || || | Sbjct 114 TGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACGATGACC 55 Query 14328 TAGAAGGGGGCAACATCCCCGCCCTGCTGGATGTG 14362 | || || || ||||| ||||| ||| |||||||| Sbjct 54 TGGAGGGTGGTAACATTCCCGCACTGTTGGATGTG 20 >seq170248 Length=157 Score = 123 bits (136), Expect = 6e-24 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 10859 GAGGAGCCCGAGGAGATGCGCGACTGCCGGTTTCGGGCGGGCAGGGAGCTGCGCGAGGGC 10918 |||||||||||||||||||| || | ||| | || || | |||||||| | ||| Sbjct 156 GAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGC 97 Query 10919 CTGGACCGCCAGCGCGTGCTGCGCGACGAGGATTTCGAGCCGAACGAGCAGACGGGGATC 10978 ||| | ||| |||| |||||||||| ||||| || ||||| ||| || || ||||| Sbjct 96 CTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATT 37 Query 10979 AGCCCCGCGCGCGCGCACGTGGCGGCGGCCAACCTG 11014 || ||||||||||| ||||||||||| ||| ||||| Sbjct 36 AGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 >seq170088 Length=938 Score = 80.6 bits (88), Expect = 6e-11 Identities = 83/105 (79%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 10904 GAGCTGCGCGAGGGCCTGGAC-CGCCAGCGCGTGCTGCGCGACGAGGATTTCGAGCC--G 10960 |||||||| | |||||| | ||| |||| |||||||||| ||||| || ||||| | Sbjct 105 GAGCTGCGGCATGGCCTGAAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCCG 46 Query 10961 AACGAGCAGACG-GGGATCAGCCCCGCGCGCGCGCACGTGGCGGC 11004 |||| || || ||||| || ||||||||||| ||||||||||| Sbjct 45 AACGCGCGAACCCGGGATTAGTCCCGCGCGCGCACACGTGGCGGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111792830833600