Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= AC_000008.1 Length=35938 Score E Sequences producing significant alignments: (Bits) Value seq171425 646 0.0 seq169466 473 3e-129 seq170248 284 3e-72 seq170456 250 6e-62 seq170088 196 1e-45 seq169021 149 1e-31 >seq171425 Length=537 Score = 646 bits (716), Expect = 0.0 Identities = 402/419 (96%), Gaps = 12/419 (3%) Strand=Plus/Plus Query 6471 CTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCG 6530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8 CTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCG 67 Query 6531 GTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCA 6590 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 68 GTAGGGG-TCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCA 126 Query 6591 GCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATG 6650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATG 186 Query 6651 CGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGT-GGGGGACCCCATGGCAT-GGGGTG 6708 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 187 CGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTG 246 Query 6709 GGTGAGCGCGGAGGCGTACATGCCGC-AAATGTCGTAAACGTAGA-GGGGCTCTCTGAGT 6766 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 247 GGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGT 306 Query 6767 ATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTAT 6826 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 307 ATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTAT 366 Query 6827 AGTTCGTG-CGA-GGGAG-CGAGGAGGT--CGGGACCGAGGTT--GCTACGGGCGGGCT 6878 |||||||| ||| ||||| ||||||||| |||||||||||| || ||||||||| Sbjct 367 AGTTCGTGCCGAGGGGAGCCGAGGAGGTTCGGGGACCGAGGTTTGCCTTGGGGCGGGCT 425 >seq169466 Length=306 Score = 473 bits (524), Expect = 3e-129 Identities = 291/304 (96%), Gaps = 5/304 (2%) Strand=Plus/Minus Query 14742 GCAGACAG-AACGGGGTTCTGGAAAGCGACA-TCGGGGTAAAGTTTGACACCCGCAACTT 14799 |||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 303 GCAGGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTT 244 Query 14800 CAGACTGGGGTTTGACCCCGTCACTGGTCTTGTCATGCC-TGGGGTATATACAAACGAAG 14858 |||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||| Sbjct 243 CAGACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAG 184 Query 14859 CCTTCCATCCAGACATCATTTTGCTGCCAGGATGC-GGGGTGGACTTCACCCACAGCCGC 14917 |||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| Sbjct 183 CCTTCCATCCAGACATCATTTTGCTGCC-GGATCCCGGGGTGGACTTCACCCACAGCCGC 125 Query 14918 CTGAGCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACC 14977 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 CTGAGCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACC 65 Query 14978 TACGATGATCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGGCG 15037 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 TACGATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGGCA 5 Query 15038 AGCT 15041 |||| Sbjct 4 AGCT 1 >seq170248 Length=157 Score = 284 bits (314), Expect = 3e-72 Identities = 157/157 (100%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 11361 AGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGG 11420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 AGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGG 98 Query 11421 CCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGAT 11480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 97 CCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGAT 38 Query 11481 TAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 11517 ||||||||||||||||||||||||||||||||||||| Sbjct 37 TAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 >seq170456 Length=152 Score = 250 bits (276), Expect = 6e-62 Identities = 145/147 (99%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 15254 CAACCCGAGGTCGAGAAGCCTCAGAAGAAACCGGTGATCAAACCCCTGACAGAGGACAGC 15313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7 CAACCCGAGGTCGAGAAGCCTCAGAAGAAACCGGTGATCAAACCCCTGACAGAGGACAGC 66 Query 15314 AAGAAACGCAGTTACAACCTAATAAGCAATGACAG-CACCTTCACCCAGTACCGCAGCTG 15372 ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 67 AAG-AACGCAGTTACAACCTAATAAGCAATGACAGTCACCTTCACCCAGTACCGCAGCTG 125 Query 15373 GTACCTTGCATACAACTACGGCGACCC 15399 ||||||||||||||||||||||||||| Sbjct 126 GTACCTTGCATACAACTACGGCGACCC 152 >seq170088 Length=938 Score = 196 bits (216), Expect = 1e-45 Identities = 134/144 (93%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 11372 AGGAGATGCGGGATCGAAAG--TTCCA-CGCA-GGGCGCGAGCTGCGGCATGGCCTGAA- 11426 ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| Sbjct 144 AGGAGATGCGGGATCGAAAAGTTTCCAACGCAAGGGCGCGAGCTGCGGCATGGCCTGAAA 85 Query 11427 TCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCC--GACGCGCGAA-CCGGGATTAG 11483 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 84 TCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCCGAACGCGCGAACCCGGGATTAG 25 Query 11484 TCCCGCGCGCGCACACGTGGCGGC 11507 |||||||||||||||||||||||| Sbjct 24 TCCCGCGCGCGCACACGTGGCGGC 1 >seq169021 Length=202 Score = 149 bits (164), Expect = 1e-31 Identities = 86/87 (99%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 6120 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 6179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 176 Query 6180 CGGTGATGCCTTTGAGGGTGGCCGCAT 6206 ||||||||||||||||||| ||||||| Sbjct 177 CGGTGATGCCTTTGAGGGT-GCCGCAT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114464737520000