Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= AC_000009.1 Length=32621 Score E Sequences producing significant alignments: (Bits) Value seq169466 163 6e-36 seq171425 96.9 7e-16 >seq169466 Length=306 Score = 163 bits (180), Expect = 6e-36 Identities = 188/252 (75%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 12769 ggggTCAAGATAGACACCAGAAACTTCCGTCTGGGGTTTGACCCCGTGACCGGATTAGTC 12828 ||||| ||| | |||||| | |||||| | |||||||||||||| || || || | ||| Sbjct 269 GGGGTAAAGTTTGACACCCGCAACTTCAGACTGGGGTTTGACCCAGTCACTGGTCTTGTC 210 Query 12829 ATGCCCGGGAAG-TACACCAACATGGCCTTTCACCCAGATATCGTTTTGGCGCCGGGCTG 12887 |||||| || || || ||| ||||| || ||||| ||| ||||| ||||| Sbjct 209 ATGCCCTAGAGTATATACAAACGAAGCCTTCCATCCAGACATCATTTTGCTGCCGGATCC 150 Query 12888 CGCCATCGATTTCACCACCAGCCGCCTCAACAACCTGTTGGGGATACGGAAGCGGTACCC 12947 || | || |||||| ||||||||| | |||| ||||||| || || |||||| | || Sbjct 149 CGGGGTGGACTTCACCCACAGCCGCCTGAGCAACTTGTTGGGCATCCGCAAGCGGCAACC 90 Query 12948 TTTTCAGGAAGGCTTCATCATCACCTACGAGGATCTCGTGGGGGGCAACATCCCGGCCCT 13007 || ||||| ||||| | ||||||||||| || || | ||| || ||||| || || || Sbjct 89 CTTCCAGGAGGGCTTTAGGATCACCTACGATGACCTGGAGGGTGGTAACATTCCCGCACT 30 Query 13008 GTTAGATGTGGA 13019 ||| |||||||| Sbjct 29 GTTGGATGTGGA 18 >seq171425 Length=537 Score = 96.9 bits (106), Expect = 7e-16 Identities = 238/355 (67%), Gaps = 5/355 (1%) Strand=Plus/Plus Query 5574 GCTCGTTGGTCCAGCATAGTCGACCTCCCTTTCGCGAACAGAACGGAGGCAGGACGTCGA 5633 |||||||||||||||| || || || ||||| ||||| ||||| || || ||| ||| | Sbjct 20 GCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGTAGG-GGTCTA 78 Query 5634 GGAATGACTCATCCGGAGGGTCGGCGTCAATGGTGAAGATGCCTGGAAGAAGTTTCTCGT 5693 | | ||| ||||| ||||| ||||| | ||| |||| || || || || | ||| Sbjct 79 GCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGCAGGCGCGCGT 138 Query 5694 CAAAGTAGTCCATTTTTTGACCAACGGATTTCAGTTGATCCTCCCAGACGGCCACCGCGA 5753 | |||||||| || || || | | || | || ||| || | || | Sbjct 139 CGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATGCGCGGGCGGCAA 198 Query 5754 GAGCCCTCTCAAATGGATTCA-AGGGGCTTCCGGACGGCAT-CGGATGCGTCAAGGCGCT 5811 | || | ||| |||| || | |||| || | ||||| || || || | ||| Sbjct 199 GCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTGGGTGAGCGCGGA 258 Query 5812 GGCGTACATTCCAC-AGATGTCATACACGTAGA-TGGGCTCGTGTAGAATTCCGATGTAT 5869 ||||||||| || | | ||||| || ||||||| |||||| || ||||| | ||| Sbjct 259 GGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGTATTCCAAGATAT 318 Query 5870 GTGGGATAGCATCGACCCCCTCGAATGCTCTGTCTCACGTAATCATACATCTCGT 5924 || || ||||||| || || || ||||| | ||||||||| || | |||| Sbjct 319 GTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTATAGTTCGT 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103888705922400