Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= AC_000010.1 Length=35524 Score E Sequences producing significant alignments: (Bits) Value seq171425 174 4e-39 seq169466 120 7e-23 >seq171425 Length=537 Score = 174 bits (192), Expect = 4e-39 Identities = 272/375 (73%), Gaps = 11/375 (3%) Strand=Plus/Plus Query 6351 CCTCGGAGGGGCTCGTTGGTCCAGCAGAGTCGACCCCCTTTTCTTGAACAGAAAgggggg 6410 || || ||| ||||||||||||||||||| || || || || | || ||||| || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6411 agggggTCTAGCATGAGT-TCATCAGGGGGGTCTGCATCCATGGTGAATATTCCTGGGAG 6469 ||||| |||||| || || || || ||||||||||| |||| ||| || | || || || Sbjct 70 AGGGG-TCTAGC-TGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAG 127 Query 6470 CAGATCTTTGTCAAAATAG-CTAATGTG-AGCGGGGTCA-TCCAAAGCCATCTGCCATTC 6526 ||| ||| || ||| ||| || | | | | || | ||| ||||||| | Sbjct 128 CAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATGC 187 Query 6527 TCGAGCTGCCAGCGCGCGTTCATAGGGATTGAGTGGGGTG-CCCCATGGCATGGGG-TGG 6584 || || || |||||||| || || || |||||||||| | ||||||||||||||| ||| Sbjct 188 GCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTGG 247 Query 6585 GTGAGTGCAGAGGCATACATGCCAC-AGATGTCATAGACATACA-GTGGTTCTTCGAGGA 6642 ||||| || ||||| |||||||| | | ||||| || || || | | || ||| ||| | Sbjct 248 GTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGTA 307 Query 6643 TGCCGATGTAGGTGGGATAACAGCGCCCCCCTCTGATGCTTGCTCGCACATAGTCATAGA 6702 | || | || || || || || | || || | |||||| || ||||| || || || | Sbjct 308 TTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTATA 367 Query 6703 GTTCATG-CGAGGGG 6716 |||| || ||||||| Sbjct 368 GTTCGTGCCGAGGGG 382 >seq169466 Length=306 Score = 120 bits (132), Expect = 7e-23 Identities = 204/292 (70%), Gaps = 3/292 (1%) Strand=Plus/Minus Query 14541 GCAGACAG-AATGGAGTGTTGGAGAGTGACATTGGTGTTAAA-TTTGACACCAGGAACTT 14598 |||| ||| || || || |||| || ||| | | | |||| ||||||||| | ||||| Sbjct 303 GCAGGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTT 244 Query 14599 TAAACTGGGTTGGGATCCGGAAACTAAGTTGATTATGCC-TGGGGTTTACACCTATGAGG 14657 | |||||| | || || | ||| | | ||||| | | || || || | || | Sbjct 243 CAGACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAG 184 Query 14658 CATTCCATCCTGACATTGTATTGTTGCCTGGTTGTGGGGTTGACTTTACTGAAAGTCGCC 14717 | |||||||| ||||| | ||| |||| | | ||||| ||||| || | || |||| Sbjct 183 CCTTCCATCCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCC 124 Query 14718 TTAGTAACTTGCTTGGTATCAGGAAAAGACACCCATTCCAGGAGGGTTTTAAGATCTTGT 14777 | || |||||| | || ||| | || | || || ||||||||||| |||| |||| | Sbjct 123 TGAGCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCT 64 Query 14778 ATGAGGATCTTGAAGGGGGTAATATCCCAGCCCTTTTGGATGTAGAAGCCTA 14829 | || || || || || ||||| || || || || |||||||| || ||||| Sbjct 63 ACGATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTA 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113144726340800