Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= AC_000011.1 Length=36519 Score E Sequences producing significant alignments: (Bits) Value seq171425 251 2e-62 seq169466 232 2e-56 seq170248 125 2e-24 >seq171425 Length=537 Score = 251 bits (278), Expect = 2e-62 Identities = 306/405 (76%), Gaps = 18/405 (4%) Strand=Plus/Plus Query 6354 CCGCGCAGGGGCTCATTAGTCCAGCAGAGGCGTCCGCCCTTGCGCGAGCAGAAggggggc 6413 ||||| ||| |||| || |||||||||||||| |||||||||||||||||||| || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6414 agggggTCCAGCATGACCTCGTCgggggggTCGGCATCGATGGTGAAGATGCCGGGCAGG 6473 ||||| || ||| |||||| |||||||| || || | ||| |||| |||||||| Sbjct 70 AGGGG-TCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGC 128 Query 6474 AGGTCGGGGTCAAAGTAGCTGATG--GAAG--TGGCCAGATCGTCCAGGGCAGCTTGCCA 6529 ||| | ||| |||||| || | | | || || || || || ||||| Sbjct 129 AGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAG----TCTAGCGCCTGCTGCCA 184 Query 6530 TTCGCGCACGGCCAGCGCGCGCTCGTAGGGACTGAGGGGCGTG-CCCCAGGGCATGGGA- 6587 | |||| |||| |||||||||||||| || |||| || | | ||||| |||||||| Sbjct 185 TGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGG 244 Query 6588 TGGGTAAGCGCGGAGGCGTACATGCCGCAGA-TGTCGTAGACGTAGAGGGGCTCCTC-GA 6645 ||||| ||||||||||||||||||||||| | ||||||| ||||||||||| ||| || Sbjct 245 TGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGA 304 Query 6646 GGATGCCGATGTAGGTGGGGTAGCAGCGCCCCCCGCGGATGCTGGCGCGCACGTAGTCAT 6705 | || || | || || |||||||| | || |||||||||||||| |||||||| || | Sbjct 305 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGT 364 Query 6706 ACAGCTCGTG-CGAGGG--GGCGAGGAGCCCCGGG--CCCAGGTT 6745 | || ||||| |||||| | ||||||| |||| || ||||| Sbjct 365 ATAGTTCGTGCCGAGGGGAGCCGAGGAGGTTCGGGGACCGAGGTT 409 >seq169466 Length=306 Score = 232 bits (256), Expect = 2e-56 Identities = 227/289 (79%), Gaps = 3/289 (1%) Strand=Plus/Minus Query 14485 GGCAG-AACGGGGTGCTGGAGAGCGACA-TCGGCGTGAAGTTCGACACTAGGAACTTCAG 14542 ||||| |||||||| ||||| |||||| |||| || ||||| ||||| | |||||||| Sbjct 300 GGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAG 241 Query 14543 GCTGGGCTGGGACCCCGTGACCGAGCTGGTCATGCCCGGG-GTGTACACCAACGAGGCTT 14601 ||||| | ||||| || || | || ||||||||| | || || || ||||| || | Sbjct 240 ACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCT 181 Query 14602 TCCATCCCGATATTGTCTTGCTGCCCGGCTGCGGGGTGGACTTCACCGAGAGCCGCCTCA 14661 ||||||| || || | |||||||| | |||||||||||||||| | |||||||| | Sbjct 180 TCCATCCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGA 121 Query 14662 GCAACCTGCTGGGCATTCGCAAGAGGCAGCCCTTCCAGGAAGGCTTCCAGATCATGTACG 14721 ||||| || ||||||| |||||| |||| ||||||||||| ||||| ||||| |||| Sbjct 120 GCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACG 61 Query 14722 AGGATCTGGAGGGGGGCAACATCCCCGCGCTCCTGGATGTCGACGCCTA 14770 | || |||||||| || ||||| ||||| || ||||||| |||||||| Sbjct 60 ATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTA 12 >seq170248 Length=157 Score = 125 bits (138), Expect = 2e-24 Identities = 124/159 (78%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 11114 GAGGAGCCCGAGGAGATGCGCGCGGCCCG---GTTCCACGCGGGGCGGGAGCTGCGGCGC 11170 |||||||||||||||||||| || || ||||||||| ||||| |||||||||| Sbjct 156 GAGGAGCCCGAGGAGATGCG---GGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCAT 100 Query 11171 GGCCTGGACCGAAAGAGGGTGCTGAGGGACGAGGATTTCGAGGCGGACGAGCTGACGGGG 11230 |||||| | || || || ||||| | || ||||| || ||| | |||| || || ||| Sbjct 99 GGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGG 40 Query 11231 ATCAGCCCCGCGCGCGCGCACGTGGCCGCGGCCAACCTG 11269 || || ||||||||||| |||||||| || ||| ||||| Sbjct 39 ATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116317216976800