Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= AC_000017.1 Length=36001 Score E Sequences producing significant alignments: (Bits) Value seq171425 619 3e-173 seq169466 491 1e-134 seq170248 266 7e-67 seq170456 246 7e-61 seq170088 178 3e-40 seq169021 141 2e-29 >seq171425 Length=537 Score = 619 bits (686), Expect = 3e-173 Identities = 396/419 (95%), Gaps = 12/419 (3%) Strand=Plus/Plus Query 6482 CTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCG 6541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8 CTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCG 67 Query 6542 GTAGGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCCGCGTCCACGGTAAAGATCCCGGGCA 6601 ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 68 GTAGGGG-TCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCA 126 Query 6602 ACAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAACGCCTGCTGCCATG 6661 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 127 GCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATG 186 Query 6662 CGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGT-GGGGGACCCCATGGCAT-GGGGTG 6719 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 187 CGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTG 246 Query 6720 GGTGAGCGCGGAGGCGTACATGCCGC-AGATGTCGTAAACGTAGA-GGGGCTCCCTGAGT 6777 |||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||| Sbjct 247 GGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGT 306 Query 6778 ATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTAT 6837 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 307 ATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTAT 366 Query 6838 AGTTCGTG-CGAGGG--GGCGAGGA-GTTC-GGGACCGAGGTT--GCTACGGGCGGGCT 6889 |||||||| |||||| | |||||| |||| |||||||||||| || ||||||||| Sbjct 367 AGTTCGTGCCGAGGGGAGCCGAGGAGGTTCGGGGACCGAGGTTTGCCTTGGGGCGGGCT 425 >seq169466 Length=306 Score = 491 bits (544), Expect = 1e-134 Identities = 295/304 (97%), Gaps = 5/304 (2%) Strand=Plus/Minus Query 14752 GCAGGCAG-AACGGGGTTCTGGAAAGCGACA-TCGGGGTAAAGTTTGACACCCGCAACTT 14809 |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 303 GCAGGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTT 244 Query 14810 CAGACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCC-TGGGGTATATACAAACGAAG 14868 ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| Sbjct 243 CAGACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAG 184 Query 14869 CCTTCCATCCAGACATCATTTTGCTGCCAGGATGC-GGGGTGGACTTCACCCACAGCCGC 14927 |||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| Sbjct 183 CCTTCCATCCAGACATCATTTTGCTGCC-GGATCCCGGGGTGGACTTCACCCACAGCCGC 125 Query 14928 CTGAGCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACC 14987 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 CTGAGCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACC 65 Query 14988 TACGATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGGCA 15047 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 TACGATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGGCA 5 Query 15048 AGCT 15051 |||| Sbjct 4 AGCT 1 >seq170248 Length=157 Score = 266 bits (294), Expect = 7e-67 Identities = 153/157 (97%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 11370 AGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCATGCAGGGCGCGAGTTGCGGCATGG 11429 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 157 AGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGG 98 Query 11430 CCTGAACCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGGACCGGGAT 11489 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 97 CCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGAT 38 Query 11490 TAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 11526 ||||||||||||||||||||||||||||||||||||| Sbjct 37 TAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 >seq170456 Length=152 Score = 246 bits (272), Expect = 7e-61 Identities = 148/153 (97%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 15267 GCTGCACAACCCGAGGTCGAGAAGCCTCAGAAGAAACCGGTGATTAAACCCCTGACAGAG 15326 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 GCTGCGCAACCCGAGGTCGAGAAGCCTCAGAAGAAACCGGTGATCAAACCCCTGACAGAG 60 Query 15327 GACAGCAAGAAACGCAGTTACAACCTAATAAGTAATGACAG-CACCTTCACCCAGTACCG 15385 ||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 61 GACAGCAAG-AACGCAGTTACAACCTAATAAGCAATGACAGTCACCTTCACCCAGTACCG 119 Query 15386 CAGCTGGTACCTTGCATACAACTACGGCGACCC 15418 ||||||||||||||||||||||||||||||||| Sbjct 120 CAGCTGGTACCTTGCATACAACTACGGCGACCC 152 >seq170088 Length=938 Score = 178 bits (196), Expect = 3e-40 Identities = 130/144 (90%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 11381 AGGAGATGCGGGATCGAAAG--TTCCAT-GCA-GGGCGCGAGTTGCGGCATGGCCTGAAC 11436 ||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||| Sbjct 144 AGGAGATGCGGGATCGAAAAGTTTCCAACGCAAGGGCGCGAGCTGCGGCATGGCCTGAAA 85 Query 11437 -CGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCC--GACGCGCGGA-CCGGGATTAG 11492 |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| Sbjct 84 TCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCCGAACGCGCGAACCCGGGATTAG 25 Query 11493 TCCCGCGCGCGCACACGTGGCGGC 11516 |||||||||||||||||||||||| Sbjct 24 TCCCGCGCGCGCACACGTGGCGGC 1 >seq169021 Length=202 Score = 141 bits (156), Expect = 2e-29 Identities = 83/85 (98%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 6131 CTTCTGCGCTAAGGTTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 6190 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 176 Query 6191 CGGTGATGCCTTTGAGGGTGGCCGC 6215 ||||||||||||||||||| ||||| Sbjct 177 CGGTGATGCCTTTGAGGGT-GCCGC 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114665608786400