Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= AC_000018.1 Length=35514 Score E Sequences producing significant alignments: (Bits) Value seq171425 161 2e-35 seq169466 152 1e-32 seq170248 80.6 6e-11 >seq171425 Length=537 Score = 161 bits (178), Expect = 2e-35 Identities = 270/379 (71%), Gaps = 19/379 (5%) Strand=Plus/Plus Query 6329 CCTCGGAGGGGCTCATTGGTCCAGCAGAGTCGACCTCCTTTTCTTGAACAGAAAgggggg 6388 || || ||| |||| |||||||||||||| || || || || | || ||||| || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6389 agggggTCTAGCATGAG-CTCATCAGGGGGGTCCGCATCTATGGTAAATATTCCCGGTAG 6447 ||||| |||||| || | ||| || |||||||| || || | |||||| | || || || Sbjct 70 AGGGG-TCTAGC-TGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAG 127 Query 6448 CAAATCTTTGTCAAAATAGCTGATGGTGGTGGGATCATC-CAAG------GTCATCTGCC 6500 || ||| || ||| || || ||| | |||| | | ||||| Sbjct 128 CAGGCGCGCGTCGAAGTAGTCTATCTTGC----ATCCTTGCAAGTCTAGCGCCTGCTGCC 183 Query 6501 ATTCTCGAACTGCCAGCGCGCGCTCATAGGGGTTAAGAGGGGTG-CCCCAGGGCATGGGG 6559 || | || | || ||||||||||| || ||||| || |||| | ||||| ||||||||| Sbjct 184 ATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGG 243 Query 6560 -TGGGTGAGCGCGGAGGCATACATGCCAC-AGATATCGTATACATAGA-GGGGCTCTTCG 6616 ||||||||||||||||| |||||||| | | || ||||| || |||| |||||||| | Sbjct 244 GTGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTG 303 Query 6617 AGGATGCCGATGTAAGTGGGATAACAGCGCCCCCCTCTGATGCTTGCTCGCACATAGTCA 6676 || || || | || || || || || | || || | |||||| || ||||| || || Sbjct 304 AGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCG 363 Query 6677 TAGAGTTCATG-TGAGGGG 6694 || ||||| || |||||| Sbjct 364 TATAGTTCGTGCCGAGGGG 382 >seq169466 Length=306 Score = 152 bits (168), Expect = 1e-32 Identities = 217/302 (72%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 14766 GCAGACAG-AATGGAGTGCTGGAAAGTGACATT-GGTGTTAAGTTTGACACTAGAAATTT 14823 |||| ||| || || || |||||||| ||| | || || ||||||||||| | || || Sbjct 303 GCAGGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTT 244 Query 14824 CAGGCTCGGGTGGGACCCCGAAACTAAGTTGATTATGCCAG-GAGTCTACACTTATGAGG 14882 ||| || |||| ||||| | ||| | | ||||| |||| || || | || | Sbjct 243 CAGACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAG 184 Query 14883 CATTCCATCCTGACATTGTATTGCTGCCTGGTTGCGGGGTAGACTTTACTGAAAGCCGAC 14942 | |||||||| ||||| | |||||||| | | |||||| ||||| || | ||||| | Sbjct 183 CCTTCCATCCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCC 124 Query 14943 TTAGCAACTTGCTTGGCATCAGGAAGAGACATCCATTCCAGGAGGGTTTCAAAATCATGT 15002 | ||||||||| | |||||| | ||| | || || ||||||||||| || | |||| | Sbjct 123 TGAGCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCT 64 Query 15003 ATGAAGATCTTGAAGGGGGTAATATTCCTGCCCTTTTGGATGTCACTGCCTATGAGGAAA 15062 | || || || || || ||||| ||||| || || |||||||| ||||| ||| || Sbjct 63 ACGATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGGCAA 4 Query 15063 GC 15064 || Sbjct 3 GC 2 >seq170248 Length=157 Score = 80.6 bits (88), Expect = 6e-11 Identities = 113/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 11384 GAGGAGCCAGAGGAGATGCGAGCATCTCGATTTA-ACGCGGGTCGCGAGCTGCGCCACGG 11442 |||||||| ||||||||||| | ||| | || |||| || ||||||||||| || || Sbjct 156 GAGGAGCCCGAGGAGATGCGGG-ATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGG 98 Query 11443 TCTGGATCGAAGACGGGTGCTGCAAGACGAGGATTTTGAGGTCGATGAAGTGACAGGGAT 11502 ||| |||| ||| |||||| || ||||| |||||| ||| | || ||||| Sbjct 97 CCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGAT 38 Query 11503 CAGCCCAGCTAGGGCACATGTGGCCGCGGCCAACCT 11538 || || || | ||||| ||||| || ||| |||| Sbjct 37 TAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113112842012800