Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= AC_000189.1 Length=34094 Score E Sequences producing significant alignments: (Bits) Value seq171425 161 2e-35 seq169466 138 2e-28 >seq171425 Length=537 Score = 161 bits (178), Expect = 2e-35 Identities = 282/401 (70%), Gaps = 15/401 (4%) Strand=Plus/Plus Query 6508 CCGCGGAGGGGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGGGAGCAGTAGGGGGGC 6567 ||||| ||| |||||||||||||||||||||||||||||||||| |||||| | || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6568 AGGACGTCCAGCTGGTCCTCGTCgggggggTCGGCGTCGATGGTGAAGAGGGCGGGCAGG 6627 ||| ||| ||||| |||||| |||||||| ||||| | ||| |||| ||||||| Sbjct 70 AGG-GGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGC 128 Query 6628 AGGTCGGGGTCGAAGTAG-CTGAGGGGC-TCGGGGC-CGTCGAGGCGGTCCTGCCAGCGG 6684 ||| | |||||||||| || || || || ||| || | |||||| | Sbjct 129 AGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATGCG 188 Query 6685 CGGGCGGCCAGGGCGCGGTCGAAGNNNNNNNNNNNTTGGCCGGCGGGGAA--GGGGTGGG 6742 |||||||| || ||||| ||| | || | | || | |||||||| Sbjct 189 CGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTGGG 248 Query 6743 TGAGGGCGCTGGCATACATGCCGC-AGATGTCATAGACGTAGA-GGGGCTCCCGCAGGAG 6800 |||| ||| ||| |||||||||| | ||||| || ||||||| ||||||| | || | Sbjct 249 TGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGTAT 308 Query 6801 GCCGATGAAGTTGGGGTAGCAGCGGCCGCCGCGCAGGCTCTTCGCGGACGTAGTCATACA 6860 || | | | |||||||| | || ||||| | ||| | || ||||| || || | Sbjct 309 TCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCT-GGCNCGCACGTAATCGTATA 367 Query 6861 GCTCGTG-GGAGGG--CGCGAGGAGGTTCGG---CCGAGGT 6895 | ||||| ||||| ||||||||||||| ||||||| Sbjct 368 GTTCGTGCCGAGGGGAGCCGAGGAGGTTCGGGGACCGAGGT 408 >seq169466 Length=306 Score = 138 bits (152), Expect = 2e-28 Identities = 180/248 (73%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 14244 TCGGGGTGAAGATCGACACGCGCAACTTCCGCCTGGGCTATGACCCGGAGACCAAGCTGG 14303 ||||||| ||| | ||||| ||||||||| | ||||| | |||||| | || || | Sbjct 271 TCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGGGGTTTGACCCAGTCACTGGTCTTG 212 Query 14304 TCATGCCCGGCAGC-TACACCAACATGGCCTTTCACCCCGACGTGGTGCTGGCACCGGGC 14362 |||||||| || || || ||| ||||| || || ||| | | || |||| Sbjct 211 TCATGCCCTAGAGTATATACAAACGAAGCCTTCCATCCAGACATCATTTTGCTGCCGGAT 152 Query 14363 TGCGCCATCGACTTCACCTTCTCCCGCCTAAACAACCTGCTGGGCATCCGCAAGCGCTAC 14422 || | ||||||||| | |||||| | |||| || |||||||||||||||| | Sbjct 151 CCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAACTTGTTGGGCATCCGCAAGCGGCAA 92 Query 14423 CCCTACCAGGAGGGCTTCATGCTGACCTACGAGGACCTGGCGGGGGGCAACATCCCCGCG 14482 |||| |||||||||||| | | | |||||||| ||||||| ||| || ||||| ||||| Sbjct 91 CCCTTCCAGGAGGGCTTTAGGATCACCTACGATGACCTGGAGGGTGGTAACATTCCCGCA 32 Query 14483 CTGCTGGA 14490 ||| |||| Sbjct 31 CTGTTGGA 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108585267436800