Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_001405.1 Length=35937 Score E Sequences producing significant alignments: (Bits) Value seq171425 641 9e-180 seq169466 491 1e-134 seq170248 269 6e-68 seq170456 260 3e-65 seq170088 181 2e-41 seq169021 145 2e-30 >seq171425 Length=537 Score = 641 bits (710), Expect = 9e-180 Identities = 401/419 (96%), Gaps = 12/419 (3%) Strand=Plus/Plus Query 6461 CTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAACAGAATGGCG 6520 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 8 CTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCG 67 Query 6521 GTAGTGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCA 6580 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 68 GTAG-GGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCA 126 Query 6581 GCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATG 6640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATG 186 Query 6641 CGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGT-GGGGGACCCCATGGCAT-GGGGTG 6698 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 187 CGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTG 246 Query 6699 GGTGAGCGCGGAGGCGTACATGCCGC-AAATGTCGTAAACGTAGA-GGGGCTCTCTGAGT 6756 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 247 GGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGT 306 Query 6757 ATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCGCGCACGTAATCGTAT 6816 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 307 ATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTAT 366 Query 6817 AGTTCGTG-CGA-GGGAG-CGAGGAGGT--CGGGACCGAGGTT--GCTACGGGCGGGCT 6868 |||||||| ||| ||||| ||||||||| |||||||||||| || ||||||||| Sbjct 367 AGTTCGTGCCGAGGGGAGCCGAGGAGGTTCGGGGACCGAGGTTTGCCTTGGGGCGGGCT 425 >seq169466 Length=306 Score = 491 bits (544), Expect = 1e-134 Identities = 295/304 (97%), Gaps = 5/304 (2%) Strand=Plus/Minus Query 14737 GCAGGCAG-AACGGGGTTCTGGAAAGCGACA-TCGGGGTAAAGTTTGACACCCGCAACTT 14794 |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 303 GCAGGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTT 244 Query 14795 CAGACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCC-TGGGGTATATACAAACGAAG 14853 ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| Sbjct 243 CAGACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAG 184 Query 14854 CCTTCCATCCAGACATCATTTTGCTGCCAGGATGC-GGGGTGGACTTCACCCACAGCCGC 14912 |||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| Sbjct 183 CCTTCCATCCAGACATCATTTTGCTGCC-GGATCCCGGGGTGGACTTCACCCACAGCCGC 125 Query 14913 CTGAGCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACC 14972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 CTGAGCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACC 65 Query 14973 TACGATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGGCA 15032 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 TACGATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGGCA 5 Query 15033 AGCT 15036 |||| Sbjct 4 AGCT 1 >seq170248 Length=157 Score = 269 bits (298), Expect = 6e-68 Identities = 154/157 (98%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 11351 AGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGTTGCGGCATGG 11410 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 157 AGAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGG 98 Query 11411 CCTGAACCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGGACCGGGAT 11470 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 97 CCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGAT 38 Query 11471 TAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 11507 ||||||||||||||||||||||||||||||||||||| Sbjct 37 TAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 >seq170456 Length=152 Score = 260 bits (288), Expect = 3e-65 Identities = 151/153 (99%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 15243 GCTGCGCAACCCGAGGTCGAGAAGCCTCAGAAGAAACCGGTGATCAAACCCCTGACAGAG 15302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCTGCGCAACCCGAGGTCGAGAAGCCTCAGAAGAAACCGGTGATCAAACCCCTGACAGAG 60 Query 15303 GACAGCAAGAAACGCAGTTACAACCTAATAAGCAATGACAG-CACCTTCACCCAGTACCG 15361 ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 GACAGCAAG-AACGCAGTTACAACCTAATAAGCAATGACAGTCACCTTCACCCAGTACCG 119 Query 15362 CAGCTGGTACCTTGCATACAACTACGGCGACCC 15394 ||||||||||||||||||||||||||||||||| Sbjct 120 CAGCTGGTACCTTGCATACAACTACGGCGACCC 152 >seq170088 Length=938 Score = 181 bits (200), Expect = 2e-41 Identities = 131/144 (91%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 11362 AGGAGATGCGGGATCGAAAG--TTCCA-CGCA-GGGCGCGAGTTGCGGCATGGCCTGAAC 11417 ||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||| Sbjct 144 AGGAGATGCGGGATCGAAAAGTTTCCAACGCAAGGGCGCGAGCTGCGGCATGGCCTGAAA 85 Query 11418 -CGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCC--GACGCGCGGA-CCGGGATTAG 11473 |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| Sbjct 84 TCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCCGAACGCGCGAACCCGGGATTAG 25 Query 11474 TCCCGCGCGCGCACACGTGGCGGC 11497 |||||||||||||||||||||||| Sbjct 24 TCCCGCGCGCGCACACGTGGCGGC 1 >seq169021 Length=202 Score = 145 bits (160), Expect = 2e-30 Identities = 84/85 (99%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 6110 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 6169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 176 Query 6170 CGGTGATGCCTTTGAGGGTGGCCGC 6194 ||||||||||||||||||| ||||| Sbjct 177 CGGTGATGCCTTTGAGGGT-GCCGC 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114461549087200