Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_001454.1 Length=34214 Score E Sequences producing significant alignments: (Bits) Value seq171425 163 6e-36 seq169466 158 3e-34 seq169021 82.4 2e-11 >seq171425 Length=537 Score = 163 bits (180), Expect = 6e-36 Identities = 269/378 (71%), Gaps = 13/378 (3%) Strand=Plus/Plus Query 6023 CCGCGCAGGGGCTCATTGGTCCAGCAAAGGCGCCCTCCTTTGCGCGAACAGAGTGGGGGC 6082 ||||| ||| |||| ||||||||||| ||||| || || |||||||| |||| ||| || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGG- 68 Query 6083 AAAACATCTAGTAGGTTTTCAGGTGGGGGGTCGGCGTCGATGGTAAAAATGCCAGGCAGC 6142 | ||||| | | || |||||||| ||||| | |||||| | || |||||| Sbjct 69 TAGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGC 128 Query 6143 AGG-GTGCGATTGAAATAATCAATGGGGGTACCAACTTGCAA---AAGAGCGTGTTCCCA 6198 ||| | ||| | ||| || || || | | ||||||| || || || | ||| Sbjct 129 AGGCGCGCG-TCGAAGTAGTCTAT---CTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCA 184 Query 6199 ATCTCGGACCGCTAGGGCGCGCTCGTAGGGATTGAGTGGGAAG-CCCCACGGCAT-GGGA 6256 | ||| | || || ||||||||||| || ||||||||| | ||||| ||||| ||| Sbjct 185 TGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGG 244 Query 6257 TGGGTAAGTGCAGAGGCGTACATGCCAC-AGATGTCATAAACGTA-AAGTGGTTCGCGTA 6314 ||||| || || |||||||||||||| | | ||||| |||||||| | | || || | | Sbjct 245 TGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGA 304 Query 6315 GCACCCCAATGTAAGTTGGATAACAGCGTCCTCCGCGAATGCTAGCCCGAACATAGTCAT 6374 | | |||| || || || || || | ||| ||||| ||||| || || || || || | Sbjct 305 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGT 364 Query 6375 ACATTTCGTGGGAAGGGG 6392 | | |||||| ||||| Sbjct 365 ATAGTTCGTGCCGAGGGG 382 >seq169466 Length=306 Score = 158 bits (174), Expect = 3e-34 Identities = 203/278 (73%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 13822 GAACGGCGTGCTGGAAAGCGACATT-GGGGTGAAGTTTGACACGCGCAACTTCCGGTTGG 13880 |||||| || |||||||||||| | ||||| ||||||||||| ||||||||| | ||| Sbjct 295 GAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGG 236 Query 13881 GTTGGGATCCCGTAACCAAGTTGGTGATGCCC-GGCGTGTACACCAACGAGGCCTTTCAC 13939 | | || || || || | || |||||| | || || || ||||| ||||| || Sbjct 235 GGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCTTCCAT 176 Query 13940 CCAGACATTGTTTTGCTACCTGGTTGCGGCGTGGATTTCACGCAAAGTCGTCTGAACAAC 13999 |||||||| ||||||| || | | ||| ||||| ||||| || || || |||| |||| Sbjct 175 CCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAAC 116 Query 14000 TTGCTAGGAATACGCAAGCGAATGCCCTTTCAAAAAGGTTTCCAAATCATGTATGAGGAT 14059 ||| | || || |||||||| ||||| || | || || |||| || || || Sbjct 115 TTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACGATGAC 56 Query 14060 TTGGAGGGCGGCAACATTCCTGCTCTATTAGATGTGGA 14097 ||||||| || |||||||| || || || |||||||| Sbjct 55 CTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGA 18 >seq169021 Length=202 Score = 82.4 bits (90), Expect = 2e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5670 CTTCAGCACTTAGAGTGTCAGTTTCCACAAACGAGGTGGATTTGATATTTATCTGCCCTG 5729 |||| || || ||| |||||||||||| |||||||| |||||||||||| | ||| || | Sbjct 117 CTTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCG 176 Query 5730 CGGCAATGCTTTTGATGGTG 5749 ||| |||| ||||| |||| Sbjct 177 CGGTGATGCCTTTGAGGGTG 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108967879372800