Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_001460.1 Length=34125 Score E Sequences producing significant alignments: (Bits) Value seq171425 131 4e-26 seq169466 86.0 1e-12 seq170248 82.4 2e-11 >seq171425 Length=537 Score = 131 bits (144), Expect = 4e-26 Identities = 259/375 (69%), Gaps = 9/375 (2%) Strand=Plus/Plus Query 6219 TACTTCACCGCGCAAGCTTTCATTGGTCCAGGCTAAACGACCGCCTTTTCTAGAACAAAA 6278 |||| | ||||| | || || ||||||||| | || ||||| || | || || || Sbjct 3 TACTACTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 62 Query 6279 AGGAGGAAGAACATCCAACTGATTTTCATCTGGGGGGTCGGCATCTATAGTAAAAATGCC 6338 || || || || | ||| | || || |||||||| || || | ||||| | || Sbjct 63 TGGCGGTAGGGG-TCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCC 121 Query 6339 AGGACAAAGATTTTTGTCAAAATAATCAATTTTGCAAG--TGTAATTTTCCAGCGCCACC 6396 || || ||| || || || || ||||| || || | | |||||| | Sbjct 122 GGGCAGCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCT--AGCGCCTGC 179 Query 6397 TGCCATTGCCGCACGGCCAATGCCCGCTCATAGGGGTTAAG-GGGAGGACCCCAAGGCAT 6455 |||||| || |||| | || ||||| || ||||| || ||| |||||||| ||||| Sbjct 180 TGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCAT 239 Query 6456 GGGG-TGTGTGAGGGCCGATGCATACATGCCGC-AAATATCATATACATATA-TGGGCTC 6512 |||| || ||||| || || || |||||||||| |||| || || || || | |||||| Sbjct 240 GGGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTC 299 Query 6513 TTTTAGTACTCCTATGTAAGTAGGATAGCACCTGCCGCCACGAATGCTGGCGCGAACGTA 6572 | | |||| ||| | || ||||| ||||| || || || || |||||||| || ||||| Sbjct 300 TCTGAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTA 359 Query 6573 GTCATATAGCTCATG 6587 || ||||| || || Sbjct 360 ATCGTATAGTTCGTG 374 >seq169466 Length=306 Score = 86.0 bits (94), Expect = 1e-12 Identities = 183/271 (68%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 13961 GGAGTGCTGGAAAGTGACATT-GGAGTTAAGTTTGACACCAGAAACTTTCGTCTGGGTTG 14019 || || |||||||| ||| | || || |||||||||||| | ||||| | ||||| | Sbjct 291 GGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGGGGTT 232 Query 14020 GGACCCCGAAACCCAATTAGT-AACTCCGGGAGTGTACACTAATGAGGCTTTTCATCCAG 14078 ||||| | || | || | || |||| || || || || || || ||||||| Sbjct 231 TGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCTTCCATCCAG 172 Query 14079 ATATAGTACTGCTTCCAGGTTGCGGGGTTGATTTTACAGAGAGCAGATTAAGCAACATAC 14138 | || | |||| || | | |||||| || || || | ||| | | |||||| | Sbjct 171 ACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAACTTGT 112 Query 14139 TAGGTATAAGAAAGAGGCAGCCGTTTCAGGAAGGATTTGTGATTATGTATGAACACTTAG 14198 | || || | ||| |||| || || ||||| || ||| ||| | || || || | | Sbjct 111 TGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACGATGACCTGG 52 Query 14199 AGGGAGGCAATATTCCAGCTCTTTTGGATGT 14229 |||| || || ||||| || || |||||||| Sbjct 51 AGGGTGGTAACATTCCCGCACTGTTGGATGT 21 >seq170248 Length=157 Score = 82.4 bits (90), Expect = 2e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10671 GAGGAAGCTGAGGAAATGCGAGACTGCAGGTTTAGGGCCGGTCGCGAGCTGCGCCGCGGA 10730 ||||| | ||||| ||||| || | | ||| || || ||||||||||| | || Sbjct 156 GAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGC 97 Query 10731 TTTAATCGCGAGCGACTGCTGCGTGAGGAGGACTTTGAGCCAGATGAACATTCGGGGATT 10790 | ||||||||||| ||||||| ||||||||||||||||| || | | | |||||| Sbjct 96 CTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATT 37 Query 10791 AGTTCTGCACGGGCCCATGTATCAGCAGCCAAC 10823 ||| | || || || || || | || ||| || Sbjct 36 AGTCCCGCGCGCGCACACGTGGCGGCCGCCGAC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108684108853600