Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq29 118 9e-22 seq204287 114 1e-20 seq23300 100 2e-16 >seq29 Length=9066916 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || || || || || ||||||||||| || |||||| ||| Sbjct 5720066 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTGCGCCCATC 5720007 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || ||||| |||| || | |||||| || || || |||||||||||||| Sbjct 5720006 CTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 5719947 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| || ||| ||||| | ||| | || Sbjct 5719946 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 5719887 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || ||||| |||||||| Sbjct 5719886 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5719854 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || | ||| || ||| || ||||| || ||| Sbjct 5719822 GTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCCAGCTGCTTGCCA 5719763 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | ||||||||| ||||| |||||||||||||| || || || Sbjct 5719762 GCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 5719703 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| || ||| ||||| | ||| | || || || ||||| || Sbjct 5719702 ACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATAGTCTTTCCAGTCAGGGTC 5719643 Query 118722 TTTACAAAAATCTGCATG 118739 || ||||| ||||||||| Sbjct 5719642 TTCACAAAGATCTGCATG 5719625 >seq204287 Length=600 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || || || || || ||||||||||| || || || ||| Sbjct 79 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCATC 138 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| |||| || | |||||| |||||||| || || |||||||| Sbjct 139 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTC 198 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| || |||||| || | ||| | || Sbjct 199 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATAGT 258 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || ||||| |||||||| Sbjct 259 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 291 >seq23300 Length=271 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || || || || || ||||||||||| || || || ||| Sbjct 219 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCATC 160 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || || |||| || | |||||| ||||| || |||||||||||||| Sbjct 159 TTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 100 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || |||||| || | ||| | || Sbjct 99 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGT 40 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || ||||| |||||||| Sbjct 39 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432220943444800