Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq11 140 4e-28 >seq11 Length=25151939 Score = 140 bits (154), Expect = 4e-28 Identities = 165/220 (75%), Gaps = 25/220 (11%) Strand=Plus/Plus Query 139505 GTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggtt--gc-cc 139561 |||| || ||| ||||| |||||| ||||||| | ||||||| ||||| | | || || Sbjct 3809539 GTGTCGGGGCGGCGCCGGCCGCGCACCCCACGTCTCAGGGGG-CGCGGCTGCTCAGCGCC 3809597 Query 139562 cgggggcgccgctcccgtgttgctctgctgggggcgcggggccgc-----------gcgc 139610 | | |||||||| ||||| || |||||||||| | | ||| || |||| Sbjct 3809598 CAGCGGCGCCGCGCCCGTTTTATTCTGCTGGGGTCCCCCGGCTGCCCAGGGTGGGCGCGC 3809657 Query 139611 CG-----CATCTCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAAT 139665 || | ||||||| |||||||||||||||||||| ||||||||||||||||||| | Sbjct 3809658 CGGTCCTCTGCTCCCGGCCGCCGCCGAGGCTGACAGAGCCGAACTCTTCGCGGCGGCAGT 3809717 Query 139666 GGCG-GGTGCCGGCCGACCGCGGCCTGC----GGGCGAGG 139700 |||| | ||| |||||||||||||| | |||||||| Sbjct 3809718 GGCGCTGAGCCCGCCGACCGCGGCCTCCACAGGGGCGAGG 3809757 Score = 140 bits (154), Expect = 4e-28 Identities = 165/220 (75%), Gaps = 25/220 (11%) Strand=Plus/Minus Query 1920 CCTCGCCC----GCAGGCCGCGGTCGGCCGGCACC-CGCCATTGCCGCCGCGAAGAGTTC 1974 |||||||| | |||||||||||||| ||| | ||||| |||||||||||||||||| Sbjct 3809757 CCTCGCCCCTGTGGAGGCCGCGGTCGGCGGGCTCAGCGCCACTGCCGCCGCGAAGAGTTC 3809698 Query 1975 GCCTCTGTCAGCCTCGGCGGCGCCCGGGAGATG-----CGgcgc-----------gcggc 2018 | |||||||||||||||||||| ||||||| | |||||| || || Sbjct 3809697 GGCTCTGTCAGCCTCGGCGGCGGCCGGGAGCAGAGGACCGGCGCGCCCACCCTGGGCAGC 3809638 Query 2019 cccgcgcccccagcagagcaacacgggagcggcgcccccggg-gc--aacccccgcgccc 2075 | | | |||||||||| || ||||| |||||||| | ||| || | | ||||| || Sbjct 3809637 CGGGGGACCCCAGCAGAATAAAACGGGCGCGGCGCCGCTGGGCGCTGAGCAGCCGCG-CC 3809579 Query 2076 cccTGCGCCGTGGGGCGCGCGGACGGCGTCGCTCCCACAC 2115 ||||| | ||||||| |||||| ||||| ||| || |||| Sbjct 3809578 CCCTGAGACGTGGGGTGCGCGGCCGGCGCCGCCCCGACAC 3809539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566903493216000