Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq13 396 2e-105 seq26 87.8 1e-12 >seq13 Length=17727969 Score = 396 bits (438), Expect = 2e-105 Identities = 753/1105 (68%), Gaps = 8/1105 (1%) Strand=Plus/Minus Query 107522 CATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGA 107581 ||||||||| || ||| || || ||||||||| ||| | |||| | || | Sbjct 2540598 CATCAACTGCTCGGGGGTCGTCCGCGGGGACCAGACAGCCATCCAAGAGGCTCAGCTCAA 2540539 Query 107582 CAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAAC 107641 ||||||||||||| || | || | | | || | | | || || ||||| || Sbjct 2540538 CAACCTGGAAGTGGCCAACAGAAGGGCTTCACCGACGCCCGGCGAGTATCTGAACATTAC 2540479 Query 107642 CAGAGACTGTGAGCGC-TTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAG 107700 || ||||| || || ||||||| || | ||| ||||||| || || | | Sbjct 2540478 GAGGGACTGC-AGAGCATTCAAGGAGACTCGGCGCTACATCGAGTTCCCGCTCAGCCAGG 2540420 Query 107701 AAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTG 107760 | ||| || |||||||| |||||||| ||| | |||| | || ||||| | |||| Sbjct 2540419 AGGAGGAGGAGTTCCCCATCGCCTACTCCATGATCATCCACCACAAAATTGACATGTTTG 2540360 Query 107761 AACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGA 107820 | ||||| ||||| |||| || ||||| |||||| | ||||| ||||| || || | Sbjct 2540359 AGCGGCTCCTGCGGTCCGTCTACGCCCCCCAGAACGTTTACTGCGTCCATGTAGACAGCA 2540300 Query 107821 AGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCT 107880 | ||||| | | ||| | ||||| || | ||||||| | |||||||||||||||||| Sbjct 2540299 AATCCCCGGCAGCCTTCCAGGAGGCCGTGAGGGCCATTGCTGCCTGCTTCCCCAATGTCT 2540240 Query 107881 TCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACC 107940 || ||||||| ||| ||||| ||||||||||||||||| ||||| || |||| Sbjct 2540239 TCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATGCCTCCTGGTCCAGGGTGCAGGCCGACC 2540180 Query 107941 TGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACAT 108000 | ||||| ||| | ||| | || |||||| | ||||||||| ||| | | || || | Sbjct 2540179 TCAACTGCATGCAGGACCTCCTGCAGAGCCCCGTGCCATGGCGCTACCTCATCAACACCT 2540120 Query 108001 GCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGA 108060 |||| || ||||||||||| |||||||| ||||||||||||| ||| || || ||||| Sbjct 2540119 GCGGCACCGACTTCCCCATCAAGACCAACGCCGAGATGGTCCGGGCGCTGCAGCTGTTGC 2540060 Query 108061 AGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAAT 108120 |||| |||||| |||||||| ||| || || | |||| | | |||||| | | Sbjct 2540059 AGGGCCAGAACACCATGGAGTCCGAGAGGCCCTCGGCCGCCAAGCAGCAGCGCTGGCAGT 2540000 Query 108121 ACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTG 108180 | | | | |||||| || || | | | || | ||| ||| || || || Sbjct 2539999 ATCACCACGAGGTGGGGGAGACCATCTCTCGCACTTCCCAGAAGAAACTGCCCCCGCCCC 2539940 Query 108181 ATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAAC 108240 | | | ||||||||||| || | || || | | | | || | ||| || | Sbjct 2539939 ACAGCTACCCCATGTTCACGGGCAGCGCGTACAACGCCGTCACACGGGACTTCGTGCGGT 2539880 Query 108241 ATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCC 108300 | |||| || ||||| | | | |||| | | || ||| ||| |||| ||| || | Sbjct 2539879 ACATCTTCGAGAACCCCACAGCACAAAAGTTCCTCGAGTGGTCCAAGGACAGCTACAGTC 2539820 Query 108301 CCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCC---TGGCTCTGTTC 108357 | ||||| || ||||||||||||| | || ||| | |||| ||| || | Sbjct 2539819 CTGACGAGTACGTCTGGGCCACCCTGAACCGCATGCCGGGCGTGCCGGGGGGCACTCCCC 2539760 Query 108358 CTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGC 108417 ||| | |||| || |||| |||||||| ||| | || | || ||||||||| Sbjct 2539759 TCAGCGA---TAAGTTCCAGCTCTCGGACATGACCGCCCTTCCCCGCCTGGTCAAGTGGG 2539703 Query 108418 AGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATC 108477 |||||| ||||| || | |||| ||| ||||| || | |||||| | || ||| | Sbjct 2539702 AGTACCTGGAGGGGGACATGAGCAAGGGCGCGCCCTACCCGCCCTGCACCGGCCGCCACC 2539643 Query 108478 GGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACC 108537 | | |||||||||| ||||||| || ||| || |||||| || ||| | || || | Sbjct 2539642 AGCGCTCCATCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTGCAGCAACACCATC 2539583 Query 108538 TCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGT 108597 || |||| |||||||| ||||| |||||| ||| | | | ||||| | || |||| Sbjct 2539582 TCCTGGCCAACAAGTTCGACCCCGAGGTGGACGATGCGGCCGTCCAGTGTCTGGAGGAGT 2539523 Query 108598 ACCTACGTCATAAGGCCATCTATGG 108622 |||| || || |||||| | || || Sbjct 2539522 ACCTGCGCCACAAGGCCCTGTACGG 2539498 >seq26 Length=11423905 Score = 87.8 bits (96), Expect = 1e-12 Identities = 556/880 (63%), Gaps = 17/880 (2%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||| | ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 383722 CCTCTCAGTGATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 383663 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | ||||| || ||||| | ||||| | Sbjct 383662 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCTCCACAGAATTTTTACTGCATT 383603 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| | || | || || |||| || | || || Sbjct 383602 CATGTAGACAAAAAGTCTCCAGAATCCTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 383543 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | ||||| ||||| || ||| |||| Sbjct 383542 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTGGTATATGCTTCATGGAGCAGA 383483 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCCA--TGGAAG 107984 ||||| || ||| | ||||| ||| |||| ||||| || | || | | ||||| Sbjct 383482 GTGCAGGCAGACATTAACTGCATGAAAGAT---CTCCACAGAAGAAGTTCAAACTGGAAA 383426 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 ||| || | || ||| || | ||||| || ||||||||||| || || || | Sbjct 383425 TACCTAATAAACCTATGTGGTATGGACTTTCCTATAAAGACCAACAAGGAAATAGTAGAG 383366 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaa 108104 | || | |||||| | ||||| |||| | || | ||| | ||| Sbjct 383365 AAATTAAAAGCCCTTAAGGGTGAAAACAGCTTGGAAACAGAAAAAATGCCTGTTTATAAA 383306 Query 108105 aaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC---ACACTGTACCCTACCAGCA-A 108160 || | ||||| | | | ||||| | | ||| | | | | || ||| | Sbjct 383305 GAAGTAAGGTGGAAGAAACACCATGAGATTATTGACGGTAAAATAAAGAACACAGGCATA 383246 Query 108161 GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGT-GG 108219 || || | | || ||| | | || | || | || | |||||||||||| | Sbjct 383245 GA-CAAACAACTACCACCTCTCAGTACTCCGGTTTTTTCTGGCAGTGCCTATTTTGTAGT 383187 Query 108220 CCTCTCGAGCCTTTGTCCAACATGTCTTAGACAAC-CCTAAATCCCAAAGACTGGTTGAA 108278 | ||| |||||| || |||| |||| ||| | |||| | ||| | |||| Sbjct 383186 TAGCAGGAG-CTTTGTAGAATATGTACTAGAAAACAGCAAAATACTTAAG-TTCATTGAG 383129 Query 108279 TGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCG 108338 |||| ||||| || || ||||| || || |||| ||||| || ||||| | ||| Sbjct 383128 TGGGCGAAAGATACTTACAGCCCAGATGAGTACCTGTGGGCAACGATTCAGAG-AATCCC 383070 Query 108339 TGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCAT 108397 || | | || ||| | || || | ||||||| || | || ||||||| |||| | Sbjct 383069 TGAAGTCCCAGGCGCGTTTTCTTCCAGTGACAAGTATGACGTTTCTGACATGAATGCCCT 383010 Query 108398 CGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGC 108457 |||||| | ||||| ||||||||| || || ||||| || || || || || | Sbjct 383009 GGCCAGGTTTGTCAAATGGCAGTACTTTGAAGGTGATGTGTCCAAAGGTGCACCCTACCC 382950 Query 108458 ACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTG 108517 ||| ||| |||| | || | | | || ||| || | |||||| || |||| Sbjct 382949 ACCGTGCAGTGGAGTTCACATTCGCTCTGTTTGTGTTTTTGGAGTAGGGGACTTGAACTG 382890 Query 108518 GATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| || | ||||| ||| | || || || ||||||||| Sbjct 382889 GATACTACGAAACCACCACTTATTTGCTAATAAGTTTGAC 382850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346976766285600