Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq204287 131 1e-25 seq29 127 2e-24 seq23300 122 7e-23 seq25213 82.4 6e-11 >seq204287 Length=600 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||| |||||| ||| |||||||| |||||||| || | Sbjct 65 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGAC 124 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || ||||| |||| || ||| ||||||||||| Sbjct 125 AGGGTACGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGG 184 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| || || ||| || | | | | |||| | ||| || Sbjct 185 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCGACT 244 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| |||||||||||||| ||||| Sbjct 245 TCCAGGGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 291 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||| ||||| ||||||||||| ||| ||| | || ||||| || Sbjct 316 GTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 375 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| || ||| ||||||||||| | ||| ||||||||| || || Sbjct 376 CTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGGATCTT 435 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||| ||||||| || || |||||||| || Sbjct 436 GGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTGCCAGT 495 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| || || || ||||| ||||| Sbjct 496 CAGGGTTTTTACGAAGATCTGCAT 519 >seq29 Length=9066916 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||| ||||| ||||||||||| || ||| | || ||||| || Sbjct 5719829 GTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCCAGCTG 5719770 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||||| ||| || || ||||| | |||||||||||| || || Sbjct 5719769 CTTGCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTT 5719710 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||||||||| | ||| || ||||| || || Sbjct 5719709 GGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATAGTCTTTCCAGT 5719650 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG-CCT-CAATACACACAGATGT 45359 ||| |||||||||||||| ||||||||| ||| ||| ||| ||| |||| Sbjct 5719649 CAGGGTCTTCACAAAGATCTGCATGTTGACCTGCAAGACATACAAATGT 5719601 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| |||||||| |||||||| || ||| ||| | || ||| Sbjct 5720062 ACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTGCGCCCATCCTCC 5720003 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| || || | |||||||||||| Sbjct 5720002 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 5719943 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||||| ||| || |||||| Sbjct 5719942 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTG 5719883 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 5719882 CCAGTCAGGGTCTTCACAAAGATCTGCAT 5719854 >seq23300 Length=271 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||| |||||| ||| |||||||| |||||||| || | Sbjct 233 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGAC 174 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || |||| || ||| |||||||| || Sbjct 173 AGGGTACGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 114 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | | |||| | ||| || Sbjct 113 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACT 54 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| |||||||||||||| ||||| Sbjct 53 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 7 >seq25213 Length=167 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||| |||||| ||| |||||||| ||||||||||| | Sbjct 42 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 101 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || ||||| |||| || ||| ||||||||||| Sbjct 102 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGG 161 Query 45230 ACACC 45234 | ||| Sbjct 162 ATACC 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393609520392400