Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq77 129 5e-25 seq204287 98.7 9e-16 seq19 89.7 5e-13 seq23300 86.0 6e-12 seq29 86.0 6e-12 >seq77 Length=1106213 Score = 129 bits (142), Expect = 5e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||| ||| |||||||| ||||| || || || || ||||| || || || | Sbjct 1101094 CCACCTCGTCCTTGCTGGTGTACTCCACAATCTCAGTGCACAGGTTGCTGCATTTGATGG 1101035 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || ||||||||| || | ||||| || ||||||||||||||||| || | Sbjct 1101034 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGAGTCCTTGTAGAGCATGTAGGGGG 1100975 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||| |||||| ||| ||||||||||| || Sbjct 1100974 TGCCAGTCTCGGTCTGGGACTCGATGATGGC 1100944 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || |||| |||||||| || ||||| ||||| ||||||| || | ||| | Sbjct 1099967 TTTCCACTCGCTTCATGAAAAGATCAGGAATCCAGAGAGCAAAGAACAGGTCCCTGGCTC 1099908 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || ||| ||||| || |||||||| ||||| |||| || || || | |||| |||| Sbjct 1099907 GCTGCTCTTCTTTACCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCC 1099848 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| | |||||| || || ||||||| Sbjct 1099847 ACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 1099812 >seq204287 Length=600 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 291 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACCCTGGAAGTCGAGCCCAGT 232 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || |||||||||||| | || ||||||||| Sbjct 231 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 172 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| |||| || | || || ||||| ||| Sbjct 171 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTGTCAGATTACAAC 112 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || ||||| || || || ||||| || | ||||| || || Sbjct 111 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGG 65 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||| || ||||| ||||| || ||||| | || ||||| || Sbjct 519 ATGCAGATCTTCGTAAAAACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGCCCAGT 460 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || |||||||||||| | || ||||||||| Sbjct 459 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 400 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| ||||||| || || || || ||| Sbjct 399 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 340 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || ||||| || || || || | || ||||| || Sbjct 339 ATCCAGAAAGAGTCAACTCTGCACCTTGTCCTGCGCCTCAGGGGTGG 293 >seq19 Length=13664266 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| ||||| |||| ||||| || |||||| | || || || | Sbjct 12085557 CAAAAATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGC 12085498 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | |||| ||||| | || |||||||||||| | || || | Sbjct 12085497 CCAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTG 12085438 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || || |||||||| ||| |||| || || | || | Sbjct 12085437 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCTGACT 12085378 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || ||||| || || ||||| || || | ||| |||| |||| Sbjct 12085377 ACAACATCCAGAAGGAATCCACACTGCATCTCGTGCTGCGCCTGCGGGGTGGTA 12085324 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || ||||| | || || ||||| Sbjct 12085324 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAACCCAGT 12085265 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || |||||||||||| | || || |||||| Sbjct 12085264 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 12085205 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || || |||||||| ||| ||||||| Sbjct 12085204 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 12085170 >seq23300 Length=271 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 7 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 66 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||| ||| | || ||||||||| Sbjct 67 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 126 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || || ||| ||||||| | || || ||||| ||| Sbjct 127 CAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCAGATTACAAC 186 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || ||||| || || || ||||| || | ||||| || || Sbjct 187 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGG 233 >seq29 Length=9066916 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| || || || |||||| | || || || || Sbjct 5719623 AACATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACTATCACCCTTGAGGTGGAGCCC 5719682 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | || || | || ||||||||| ||| | || || || Sbjct 5719683 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGAT 5719742 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | | || ||||||||||| ||| ||||||| | ||| | || || Sbjct 5719743 CAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTCTCTGACTAC 5719802 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || ||||| || ||||| || || || || | || ||||| || Sbjct 5719803 AACATCCAGAAAGAGTCAACTCTGCACCTTGTCCTGCGCCTCAGGGGTGG 5719852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444070258848000