Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_003266.2 Length=35994 Score E Sequences producing significant alignments: (Bits) Value seq171425 273 5e-69 seq169466 237 4e-58 seq170248 111 4e-20 >seq171425 Length=537 Score = 273 bits (302), Expect = 5e-69 Identities = 296/384 (77%), Gaps = 8/384 (2%) Strand=Plus/Plus Query 6309 CCGCGCAGGGGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAggggggc 6368 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6369 agggggTCCAGCATAAGCTCGTCgggggggTCAGCATCGATGGTGAAGATGCCTGGCAGG 6428 | |||||| ||| |||||| |||||||| || || | ||| |||| || ||||| Sbjct 70 A-GGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGC 128 Query 6429 AGGTCGGGGTCGAAGTAGCTTATGCAGGTGCCCAGATCGTCCAGAGAAGCTTGCCATTCG 6488 ||| | |||||||||| ||| | || | ||| || | |||||| || Sbjct 129 AGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATGCG 188 Query 6489 CGCACGGCCAGCGCGCGCTCGTAGGGACTAAG-GGGCGTGCCCCAGGGCAT-GGGGTGGG 6546 || |||| |||||||||||||| || | || ||| | ||||| ||||| |||||||| Sbjct 189 CGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTGGG 248 Query 6547 TGAGCGCGGAGGCGTACATGCCGC-AGATGTCGTAGACGTAGA-GGGGCTCATCAAGGAT 6604 |||||||||||||||||||||||| | |||||||| ||||||| ||||||| || || Sbjct 249 TGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGTAT 308 Query 6605 GCCAATGTAGGTGGGGTAGCAGCGGCCCCCGCGGATGCTGGCGCGCACGTAGTCATACAA 6664 |||| || || |||||||| | || |||||||||||||| |||||||| || || | Sbjct 309 TCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTATAG 368 Query 6665 CTCGTG-CGAGGG--GGCGAGGAG 6685 ||||| |||||| | ||||||| Sbjct 369 TTCGTGCCGAGGGGAGCCGAGGAG 392 >seq169466 Length=306 Score = 237 bits (262), Expect = 4e-58 Identities = 228/289 (79%), Gaps = 3/289 (1%) Strand=Plus/Minus Query 14419 GGCAG-AACGGGGTGCTGGAGAGCGACA-TCGGCGTGAAGTTCGACACCCGGAACTTCAG 14476 ||||| |||||||| ||||| |||||| |||| || ||||| |||||||| |||||||| Sbjct 300 GGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAG 241 Query 14477 GCTGGGTTGGGACCCCGTGACCGAGCTGGTCATGCCCGGG-GTGTACACCAACGAGGCCT 14535 ||||| | ||||| || || | || ||||||||| | || || || ||||| |||| Sbjct 240 ACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCT 181 Query 14536 TCCACCCCGACATCGTGCTGTTGCCCGGCTGCGGGGTGGACTTTACCGAGAGCCGCCTCA 14595 |||| || |||||| | || |||| | |||||||||||| ||| | |||||||| | Sbjct 180 TCCATCCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGA 121 Query 14596 GTAATATGCTGGGCATCCGCAAGAGGCAGCCCTTCCAGGAGGGTTTCCAGATCATGTACG 14655 | || || |||||||||||||| |||| |||||||||||||| || ||||| |||| Sbjct 120 GCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACG 61 Query 14656 AGGACCTGGATGGAGGTAACATCCCCGCGCTCTTGGATGTCGAGGCCTA 14704 | |||||||| || |||||||| ||||| || |||||||| || ||||| Sbjct 60 ATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTA 12 >seq170248 Length=157 Score = 111 bits (122), Expect = 4e-20 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 11059 GAGGAGCCCGAGGAGATGCGCGCAGCCCGTTTCCACGCGGGGCGGGAGCTGCGGCGCGGC 11118 |||||||||||||||||||| | |||||||| ||||| |||||||||| ||| Sbjct 156 GAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGC 97 Query 11119 CTGGACAGAAAGAGGGTGCTGAGGGACGAGGATTTCGAGGCGGACGAGCTGACGGGGATC 11178 ||| | | || || ||||| | || ||||| || ||| | |||| || || ||||| Sbjct 96 CTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATT 37 Query 11179 AGCCCTGCGCGCGCGCACGTGGCCGCGGCCAACCTG 11214 || || |||||||| |||||||| || ||| ||||| Sbjct 36 AGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114643289756800