Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq30 120 4e-22 seq1 114 2e-20 seq2 102 1e-16 seq252792 93.3 6e-14 seq77 89.7 7e-13 >seq30 Length=8497414 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || | |||| || | | ||| || ||||||||||| ||||||||| Sbjct 7074737 TATTTTTTATTAAATGCCTCCAGAAAACGCAGCAGGTGTAAGAACAGATTTATGATATCC 7074796 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | ||| || || || Sbjct 7074797 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGACAACTTGTGCATCAGCAGA 7074856 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 7074857 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAAC 7074916 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 7074917 TCTATTGTCTCACT 7074930 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 9448 ACAAAATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCT 9507 |||| | |||||| ||| | |||| | |||||||||| ||| ||||| ||||||| Sbjct 7076055 ACAACAAAAAAATCATCAATATGACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCT 7076114 Query 9508 TTGATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTT 9567 |||| || | ||||||||||||| ||||||| || |||||||| || || || |||| Sbjct 7076115 TTGACTGCAAGGTATATGCAGTCAATCCAAGAAATACAGCAGTAGTTAGAATAAAGGCTT 7076174 Query 9568 GCATAACGACATGCACATCATAGAAA 9593 ||| || | |||||||||||| Sbjct 7076175 GCAAGACAATGGAGACATCATAGAAA 7076200 >seq1 Length=88717973 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 70129874 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 70129933 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 70129934 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 70129993 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 70129994 CAACCACTCTCTCACC 70130009 >seq2 Length=67421796 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| || ||||| || ||||| ||||||| || | || | Sbjct 53986096 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATTAATCCTCTTTTCT 53986037 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 53986036 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 53985977 Query 36300 C 36300 | Sbjct 53985976 C 53985976 >seq252792 Length=893 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || || || ||| | || || || || ||||| | Sbjct 455 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTCCCATAGTTGGGCTCAGCAATGTGGATGT 514 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || || ||||||||||| || |||||||||||||| || | ||| || | Sbjct 515 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 574 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 |||| | || ||||| | |||||| || | |||| | || || |||| Sbjct 575 TTTGGGAGATCTCCCACACAGTTTTGTAGAGCTGCTTCAGGTCATCGGGAA 625 >seq77 Length=1106213 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118 |||||| ||||| || |||||||||||||| ||||| | || | || |||| || || Sbjct 1099963 CACTCGCTTCATGAAAAGATCAGGAATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTG 1099904 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || ||||| ||||| || | || |||||| | | || || | |||||||| Sbjct 1099903 CTCTTCTTTACCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGG 1099844 Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 1099843 CTCCAGGTAGATGGCAAAAGCCCCAGG 1099817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655668452496000