Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 129 8e-25 seq2 111 2e-19 seq252792 96.9 5e-15 seq77 96.9 5e-15 >seq1 Length=88717973 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 70129874 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 70129933 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 70129934 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 70129993 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 70129994 CAACCACTCTCTCACC 70130009 >seq2 Length=67421796 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| || ||||| || ||||| ||||||| || | || | Sbjct 53986096 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATTAATCCTCTTTTCT 53986037 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || |||||||||||||||||||| || || ||||||| Sbjct 53986036 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 53985977 Query 50102 CAAC 50105 | || Sbjct 53985976 CCAC 53985973 >seq252792 Length=893 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || || || ||| | || || || || ||||| | Sbjct 455 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTCCCATAGTTGGGCTCAGCAATGTGGATGT 514 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || ||||||||||| || |||||||||||||| || | ||| || | Sbjct 515 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 574 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 |||| | || ||||| | |||||| || | |||| | || || |||| Sbjct 575 TTTGGGAGATCTCCCACACAGTTTTGTAGAGCTGCTTCAGGTCATCGGGAA 625 >seq77 Length=1106213 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| || |||||||||||||| ||||| | || || || |||| || ||| Sbjct 1099962 ACTCGCTTCATGAAAAGATCAGGAATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGC 1099903 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || ||||| ||||| || | || |||||| | | || || | |||||||| Sbjct 1099902 TCTTCTTTACCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 1099843 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | | || |||| Sbjct 1099842 TCCAGGTAGATGGCAAAAGCCCCAGGTC 1099815 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || || |||||||| || || || ||||| || | |||||| | | Sbjct 1094694 CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGACACGGCGATGCGGGCGGCCAGGA 1094635 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 |||| || || || || | || || ||||| || | || || ||||||||||||| Sbjct 1094634 TGGCGTAGTCGGGGTGCTTGGTGGTCAGTGTGGCCGCGGTCTCTGCGGCCAGAGTGTCCA 1094575 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || ||||| || || || | || | || ||||| |||||||| Sbjct 1094574 GCTCCACCGTGGTGACCCCGCTGTAGAGCCCCTGGATCACCTTCAT 1094529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715535787216000