Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 129 8e-25 seq2 111 2e-19 seq252792 102 1e-16 seq77 93.3 6e-14 >seq1 Length=88717973 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 70129874 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 70129933 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 70129934 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 70129993 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 70129994 CAACCACTCTCTCACC 70130009 >seq2 Length=67421796 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| || ||||| || ||||| ||||||| || | || | Sbjct 53986096 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATTAATCCTCTTTTCT 53986037 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || |||||||||||||||||||| || || ||||||| Sbjct 53986036 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 53985977 Query 42207 C 42207 | Sbjct 53985976 C 53985976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 41754 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCT 41813 |||| ||||| |||||||| | || |||||||| || || || || || ||||| |||| Sbjct 53987332 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCT 53987274 Query 41814 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 | ||||||| || || ||||||||||| ||||| ||||| Sbjct 53987273 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 53987234 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || ||| ||| |||| || || || || | |||||| |||||||||||||| || ||| Sbjct 53984457 TCCTTAGAATCCTTAATGTAGGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTT 53984398 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| ||||| || || |||||||| | || || || | ||||||||| Sbjct 53984397 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 53984344 >seq252792 Length=893 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || ||||| || || || || |||| | || || || ||||| || | Sbjct 455 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTCCCATAGTTGGGCTCAGCAATGTGGATGT 514 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || || ||||||||||| || |||||||||||||| || | ||| || | Sbjct 515 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 574 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 |||| | || ||||| | |||||| || | |||| | || || |||| Sbjct 575 TTTGGGAGATCTCCCACACAGTTTTGTAGAGCTGCTTCAGGTCATCGGGAA 625 >seq77 Length=1106213 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || |||||||| || || || ||||| || | |||||| || | Sbjct 1094694 CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGACACGGCGATGCGGGCGGCCAGGA 1094635 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||| || || || || | || || ||||| || | ||||| ||||||||||||| Sbjct 1094634 TGGCGTAGTCGGGGTGCTTGGTGGTCAGTGTGGCCGCGGTCTCTGCGGCCAGAGTGTCCA 1094575 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || ||||| || || || | || | || ||||| |||||||| Sbjct 1094574 GCTCCACCGTGGTGACCCCGCTGTAGAGCCCCTGGATCACCTTCAT 1094529 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| || |||||||||||||| ||||| | || || || |||| || ||| Sbjct 1099962 ACTCGCTTCATGAAAAGATCAGGAATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGC 1099903 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || ||||| ||||| || | || |||||| | | || || | |||||||| Sbjct 1099902 TCTTCTTTACCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 1099843 Query 72142 TCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 1099842 TCCAGGTAGATGGC 1099829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668585515344000