Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_006144.1 Length=34246 Score E Sequences producing significant alignments: (Bits) Value seq171425 242 8e-60 seq169466 178 3e-40 seq170248 105 1e-18 >seq171425 Length=537 Score = 242 bits (268), Expect = 8e-60 Identities = 296/390 (76%), Gaps = 12/390 (3%) Strand=Plus/Plus Query 6304 CTCCGCGCAGGGGCTCGTTGGTCCAGCAGAGGCGACCGCCCTTGCGAGAGCAGAAGGGTG 6363 ||||||| ||| |||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 8 CTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCG 67 Query 6364 GCAGGGGGTCAAGCAGGCGCTCGTCCGGGGGGTCGGCGTCGATGGTAAAGATGGCGGGCA 6423 | | |||||| ||| | ||||||||||||||| ||||| | |||||||| |||||| Sbjct 68 GTA-GGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCA 126 Query 6424 GGAGGTGTTTGTCAAAGTAGTCGATCTGATGC-CCGGGGCGACGC-AGGGCGGTTTCCCA 6481 | ||| | ||| |||||||| |||| ||| | || | | || || | ||| Sbjct 127 GCAGGCGCGCGTCGAAGTAGTCTATCT--TGCATCCTTGCAAGTCTAGCGCCTGCTGCCA 184 Query 6482 GTCCCGCACCGCCAAGGCGCGCTCGTAGGGACTGAG-GGGGGCGCCCCAGGGCAT-GGGA 6539 | || | || | ||||||||||| || |||| ||||| ||||| ||||| ||| Sbjct 185 TGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGG 244 Query 6540 TGCGTCAGGGCCGAGGCGTACATGCCGC-AGATGTCGTAGACGTA-AAGGGGCTCCTCCA 6597 || || || || |||||||||||||||| | |||||||| ||||| | ||||||| | Sbjct 245 TGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGA 304 Query 6598 GGACGCCGAGGTAGGTTGGGTAGCAGCGCCCCCCGCGGATGCTGGCCCGTACGTAGTCGT 6657 | | || || || || |||||||| | || |||||||||||||| || ||||| |||| Sbjct 305 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGT 364 Query 6658 AGAGCTCGTG-CGAGGGG-GCC-AGAAGGT 6684 | || ||||| ||||||| ||| || |||| Sbjct 365 ATAGTTCGTGCCGAGGGGAGCCGAGGAGGT 394 >seq169466 Length=306 Score = 178 bits (196), Expect = 3e-40 Identities = 217/294 (74%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 14025 GAAGGGGGTTAAAGAAAGCGAGA-TCGGCGTCAAGTTTGACACGCGCAACTTTCGTCTGG 14083 ||| |||||| |||||||| |||| || ||||||||||| |||||||| | |||| Sbjct 295 GAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGG 236 Query 14084 GGTGGGATCCGGAGACGGGGCTGGTGATGCCGGGG-GTGTACACGAACGAAGCCTTCCAT 14142 ||| || || | || || || || ||||| | || || || ||||||||||||||| Sbjct 235 GGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCTTCCAT 176 Query 14143 CCCGACGTGGTACTCTTGCCCGGCTGCGGGGTGGACTTCACCTACAGCCGTCTGAACAAC 14202 || ||| | | | |||| | |||||||||||||||| ||||||| |||| |||| Sbjct 175 CCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAAC 116 Query 14203 CTGCTGGGCATACGCAAGAGAATGCCCTTTCAGGAAGGGTTTCAGATTCTGTACGAGGAC 14262 || ||||||| |||||| | ||||| ||||| || ||| ||| ||||| ||| Sbjct 115 TTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACGATGAC 56 Query 14263 CTGGCGGGCGGTAACATCCCGGCCCTGCTGGACGTGCCGGCGTACGAGGCGAGC 14316 |||| ||| |||||||| || || ||| |||| ||| || ||| |||| ||| Sbjct 55 CTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGGCAAGC 2 >seq170248 Length=157 Score = 105 bits (116), Expect = 1e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 10722 GAGGAGGCCGAGGAGATGCGAGACTTGCGTTTTCGGGCGGGGCGGGAGTTGCGTCACGGG 10781 |||||| ||||||||||||| || || | || ||||| ||| |||| || || Sbjct 156 GAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGC 97 Query 10782 CTGGACCGGCAAAGGGTTCTGAGAGAGGAGGACTTTGAGGCGGACGAGCGCACGGGGGTG 10841 ||| | || | || | ||| | ||||||||||||||| | |||| ||| || ||| | Sbjct 96 CTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATT 37 Query 10842 AGTTCCGCGCGGGCTCACGTGGCGGCCGCCAACCTG 10877 ||| ||||||| || ||||||||||||||| ||||| Sbjct 36 AGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109069909222400