Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq10 170 3e-37 seq23 116 5e-21 >seq10 Length=27271039 Score = 170 bits (188), Expect = 3e-37 Identities = 216/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| |||||| | |||| || ||| | | || Sbjct 2972491 GGAAGGCAGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 2972432 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| ||| | || ||||| | || || ||||||||||| |||||||| | |||| Sbjct 2972431 TGTTGATGATGTCGAAGCCCACCTTGCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 2972372 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| |||| || || || ||||| ||||| || |||| ||| | ||| Sbjct 2972371 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGTGCTCCCATCTCCACCATGG 2972312 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || |||||||| ||| |||||||| ||||||| | || | ||||| ||||| Sbjct 2972311 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 2972252 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||||||| ||||| || || || || || || || || |||||||||| Sbjct 2972251 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 2972195 Score = 100 bits (110), Expect = 4e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | ||||| || | |||||| || || || ||||| ||| || || || Sbjct 2970566 TCACCGATCAGAATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 2970507 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | | || || || ||||| || | |||||| || | |||||||| || ||||||||| Sbjct 2970506 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATC 2970447 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || |||||||| || || |||| || || || | | |||| | |||||| Sbjct 2970446 ATGAGCCCGGGCACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCGGGC 2970387 Query 9790 ACTTCGGGAGGATAGATCAT 9809 || | ||| || || | ||| Sbjct 2970386 ACGTGGGGTGGGTACAGCAT 2970367 Score = 86.0 bits (94), Expect = 9e-12 Identities = 117/162 (72%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || || | || || || || | |||| | Sbjct 2968704 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 2968645 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||| |||||||| ||||||||||| || ||| | |||||| ||||| | Sbjct 2968644 TAGTAGGAAAGATTGGAATAAGCTTCCCAGGTTTTGTAATTGTAGTCACTATTGTAAGTT 2968585 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448 || |||||||||||||| | ||||| ||||| | |||||| Sbjct 2968584 GGTGGGCTGTCAATCAAGTGTGATCTTGCTGAA-AGGCAAAA 2968544 >seq23 Length=11135842 Score = 116 bits (128), Expect = 5e-21 Identities = 183/262 (70%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 ||||||| | |||| ||| || |||||| || || || ||| | | ||| Sbjct 1585592 GGAACGCCACGTACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTGCAGGGATGCCG 1585651 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| || ||||| |||||||||||||| | || | Sbjct 1585652 TCTTCACAATCTCAAAGCCAGTTGCTCCACCAAAGGTACTGGGTTTCCAGTACTCTGGAG 1585711 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| || | | || || || |||||||| ||||| || | ||| | |||| Sbjct 1585712 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1585771 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| | ||||| |||| || |||| || || || | ||| ||||||| Sbjct 1585772 TTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCCAGCAGCAAGCCTGGGTAAAACTCCA 1585831 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 1585832 GAGCATCAATGTCTCCATACAG 1585853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705828863136000