Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7 152 8e-33 >seq7 Length=42072568 Score = 152 bits (168), Expect = 8e-33 Identities = 197/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 7156616 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 7156675 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||||||||||| Sbjct 7156676 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTTATCTATGAAGAGAC 7156735 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || ||| || ||| || || Sbjct 7156736 GCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACGGA 7156795 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||||||||| ||||||| | ||||| || | || || || || Sbjct 7156796 GCACGCCAAGAGGAAGACTGTCACAGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 7156855 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | || || ||||| ||||| ||| Sbjct 7156856 TCGCACCCTCTACGGCTTTGGCGGTTAAACTT 7156887 Score = 149 bits (164), Expect = 1e-31 Identities = 196/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 7133694 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 7133635 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||||||||||| Sbjct 7133634 CCGCCGCCTGGCTCGGCGCGGCGGCGTTAAGCGCATCTCGGGGCTCATCTATGAAGAGAC 7133575 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 7133574 TCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 7133515 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||||||||| ||||||| | ||||| || | || || || || Sbjct 7133514 GCACGCCAAGAGGAAGACTGTCACAGCCATGGACGTAGTCTACGCCCTTAAGCGCCAGGG 7133455 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | || || ||||| ||||| ||| Sbjct 7133454 TCGCACTCTCTACGGCTTTGGCGGTTAAACTT 7133423 Score = 149 bits (164), Expect = 1e-31 Identities = 196/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 7158273 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 7158214 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||||||||||| Sbjct 7158213 CCGCCGCCTGGCTCGGCGCGGCGGTGTCAAGCGCATCTCGGGGCTTATCTATGAAGAGAC 7158154 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 7158153 GCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACTGA 7158094 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||||||||| ||||||| | ||||| || | || || || || Sbjct 7158093 GCACGCCAAGAGGAAGACTGTCACAGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 7158034 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | || || ||||| ||||| ||| Sbjct 7158033 TCGCACTCTCTACGGCTTTGGCGGTTAAACTT 7158002 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| || ||| Sbjct 7099517 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 7099576 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| || || || |||||||| |||| || || |||| || |||| | Sbjct 7099577 CGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTGATCTACGAGGAGACT 7099636 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || ||| || ||| || ||| Sbjct 7099637 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACGGAG 7099696 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||||||||| ||||||| | ||||| || | || || ||||| Sbjct 7099697 CACGCCAAGAGGAAGACTGTCACAGCCATGGACGTAGTCTACGCTCTCAAGCGCCAAGGT 7099756 Query 16673 CG 16674 || Sbjct 7099757 CG 7099758 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 7084653 CGCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 7084594 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || || |||| || || | Sbjct 7084593 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTGATCTACGAGGAAAC 7084534 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || ||| || ||| || || Sbjct 7084533 TCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACGGA 7084474 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| || ||||||| | ||||| || | || || ||||| Sbjct 7084473 GCACGCCAAGAGGAAGACTGTTACAGCCATGGACGTAGTCTACGCTCTCAAGCGCCAAGG 7084414 Query 16672 CCG 16674 || Sbjct 7084413 TCG 7084411 Score = 140 bits (154), Expect = 5e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| || || || |||||||| || ||||| ||||| || ||| Sbjct 7107875 GCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACTAAGCCGGCCATC 7107816 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| || || || || ||||| |||| || || |||| || |||| | Sbjct 7107815 CGCCGCCTGGCTCGGCGCGGCGGCGTTAAGCGCATCTCGGGGCTGATCTACGAGGAGACT 7107756 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 7107755 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAG 7107696 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||||||||| ||||||| | ||||| || | || || ||||| Sbjct 7107695 CACGCCAAAAGGAAGACTGTCACAGCCATGGACGTAGTCTACGCTCTCAAGCGCCAAGGT 7107636 Query 16673 CG 16674 || Sbjct 7107635 CG 7107634 Score = 136 bits (150), Expect = 6e-28 Identities = 194/273 (71%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 7129337 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 7129396 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | ||||||| || | Sbjct 7129397 CCGCCGCCTGGCTCGGCGCGGCGGTGTCAAGCGCATCTCGGGGCTCATCTATGAGGAAAC 7129456 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 7129457 TCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 7129516 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||||||||| | ||||| | |||||||| | || || || || Sbjct 7129517 GCACGCCAAGAGGAAGACTGTCACAGCTATGGACGTAGTCTATGCCCTCAAGCGCCAGGG 7129576 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 || | | || || || || ||||| |||| Sbjct 7129577 TCGCACTCTCTACGGCTTCGGCGGTTAAACTTC 7129609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78796884949200