Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_006879.1 Length=34450 Score E Sequences producing significant alignments: (Bits) Value seq169466 178 3e-40 seq171425 140 7e-29 seq170248 91.5 3e-14 seq169021 89.7 1e-13 >seq169466 Length=306 Score = 178 bits (196), Expect = 3e-40 Identities = 201/266 (76%), Gaps = 3/266 (1%) Strand=Plus/Minus Query 13693 AGGCAG-AACGGGGTATTGGAAAGCGATA-TCGGCGTAAAATTTGATACCAGAAACTTCC 13750 |||||| |||||||| |||||||||| |||| ||||| ||||| ||| | |||||| Sbjct 301 AGGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCA 242 Query 13751 GACTGGGGTGGGATCCCGTGACCAAGCTGGTGATGCCAG-GCGTGTACACCAACGAGGCT 13809 ||||||||| || || || || || || ||||| | || || || ||||| || Sbjct 241 GACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCC 182 Query 13810 TTTCACCCCGACATCGTGCTGCTGCCGGGGTGCGGTGTGGACTTCACTCAGAGCCGTTTG 13869 || || || |||||| | ||||||||| ||| ||||||||||| || ||||| || Sbjct 181 TTCCATCCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTG 122 Query 13870 AGTAACCTGTTAGGGATCAGAAAGCGCCGCCCCTTCCAAGAGGGCTTTCAGATCATGTAT 13929 || ||| |||| || ||| | ||||| | |||||||| ||||||||| ||||| || Sbjct 121 AGCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTAC 62 Query 13930 GAGGACCTGGAAGGAGGTAACATTCC 13955 || |||||||| || ||||||||||| Sbjct 61 GATGACCTGGAGGGTGGTAACATTCC 36 >seq171425 Length=537 Score = 140 bits (154), Expect = 7e-29 Identities = 267/382 (70%), Gaps = 15/382 (4%) Strand=Plus/Plus Query 5972 CCGCGGAGGGGCTCGTTGGTCCAACACAATCGCCCCCCTTTTCTGGAGCAGAACGGAGGC 6031 ||||| ||| ||||||||||||| || | || || || || | |||||||| || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6032 AGGGGATCTAGCAAGTTGGCGGGCGGGGGGTCGGCGTCGATGGTAAATATGCCGGGTAGC 6091 ||||| |||||| | || ||||||||| ||||| | |||||| | ||||| ||| Sbjct 70 AGGGG-TCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGC 128 Query 6092 AGAATTTTATTAAAATAATCGATTTCGGTGTCCGTG----TCTTGCAACGCGTCTTCCCA 6147 || | || || || || | | ||| || ||| || || | | ||| Sbjct 129 AGGCGCGCGTCGAAGTAGTCTATCTTGCA-TCCTTGCAAGTCTAGC---GCCTGCTGCCA 184 Query 6148 CTTCTTCACCGCCAGGGCCCTTTCGTAGGGATTCAG-GGGCGGTCCCCAGGGCATGGGG- 6205 | || || || | ||||| || || || ||| || ||||| ||||||||| Sbjct 185 TGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGG 244 Query 6206 TGGGTCAGGGCCGAGGCGTACATGCCGCAGA-TGTCGTACACGTACAGGGG-CTCCCTCA 6263 ||||| || || ||||||||||||||||| | ||||||| ||||| ||||| ||| || | Sbjct 245 TGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGA 304 Query 6264 ACACCCCGATGTAAGTGGGGTAACAGCGCCCCCCGCGGATGCTGGCTCGCACGTAGTCGT 6323 | || | || || ||||| || | || |||||||||||||| |||||||| |||| Sbjct 305 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGT 364 Query 6324 ACATCTCGTG-AGA-GGGAGCC 6343 | | ||||| || ||||||| Sbjct 365 ATAGTTCGTGCCGAGGGGAGCC 386 >seq170248 Length=157 Score = 91.5 bits (100), Expect = 3e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 10431 AGGAGGCGGAGGAGATGCGCGATTGCAGGTTTCGGGCGGGTAGAGAGCTGAGGGCGGGCT 10490 ||||| | ||||||||||| ||| | | ||| | || || | |||||| || ||| Sbjct 155 AGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGCC 96 Query 10491 TCGATCGGGAGCGGCTCCTGAGGGCGGAGGATTTCGAGCCCGACGAGCGTTCTGGGGTGA 10550 | |||| |||||| | ||| | | |||||| || |||||||||| ||| | ||| | | Sbjct 95 TGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATTA 36 Query 10551 GCCCGGCCCGCGCTCACGTCTCGGCGGCCAACCTG 10585 | || || ||||| ||||| |||| ||| ||||| Sbjct 35 GTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 >seq169021 Length=202 Score = 89.7 bits (98), Expect = 1e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 5620 TTCGGCGCTCAAGTTGTCAGTTTCTACAAACGAGGTGGATTTGATATTCACGTGCCCCGC 5679 ||| ||||| | ||||||||||| | |||||||| ||||||||||||||| || ||||| Sbjct 118 TTCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGC 177 Query 5680 GGCGATGCTTTTGATGGTG 5698 || ||||| ||||| |||| Sbjct 178 GGTGATGCCTTTGAGGGTG 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109720349513600