Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq204287 87.8 2e-12 seq29 87.8 2e-12 >seq204287 Length=600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | |||||| | ||| | || | | Sbjct 291 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACCCTGGAAGTCGAGCCCAGT 232 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| ||||| ||||| || |||||||| || Sbjct 231 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 172 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTATA 26946 || || || || | || ||||| || || || |||| | | | | |||| || || | Sbjct 171 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTGTCA--GATTACA 114 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || || ||||| || | || ||||| ||| | || ||||| || Sbjct 113 ACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGG 65 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || |||||||| | ||||| || | ||||| | || | || | | Sbjct 519 ATGCAGATCTTCGTAAAAACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGCCCAGT 460 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| ||||| ||||| || |||||||| || Sbjct 459 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 400 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || ||||| || || ||||||| | | | | ||||| ||| Sbjct 399 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 340 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || ||| | || || |||||| | || || || || Sbjct 339 ATCCAGAAAGAGTCAACTCTGCACCTTGTCCTGCGCCTCAGGGGTGG 293 >seq29 Length=9066916 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | ||||| || || | |||||||| | |||||| | || | || | Sbjct 5719622 CAACATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACTATCACCCTTGAGGTGGAGCC 5719681 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | |||||||||||| | || || ||||| ||||| || || || ||||| || Sbjct 5719682 CAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGA 5719741 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || || | || | || ||||| || || ||||||| | | | || ||||| Sbjct 5719742 TCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTCTCTGACTA 5719801 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || ||||| || ||| | || || |||||| | || || || || Sbjct 5719802 CAACATCCAGAAAGAGTCAACTCTGCACCTTGTCCTGCGCCTCAGGGGTGG 5719852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476841089568000