Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq204287 102 7e-17 seq29 93.3 4e-14 >seq204287 Length=600 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || ||| | ||||||||| ||| Sbjct 291 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACCCTGGAAGTCGAGCCCAGT 232 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| ||||| || |||||||| || Sbjct 231 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 172 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 ||||| ||||| | || |||||||| || || |||| | | | |||| ||||| | Sbjct 171 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTGTCA--GATTACA 114 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||| || || ||||| || Sbjct 113 ACATCCAGAAGGAATCCAC 95 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || |||||||| | ||||| || | || || | || || ||| ||| Sbjct 519 ATGCAGATCTTCGTAAAAACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGCCCAGT 460 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| ||||| || |||||||| || Sbjct 459 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 400 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | || |||||||| || ||||||| Sbjct 399 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATG 363 >seq29 Length=9066916 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| || || | |||||||| | || ||| | || || ||| | Sbjct 5719622 CAACATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACTATCACCCTTGAGGTGGAGCC 5719681 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | || || ||||| ||||| || ||||| ||||| || Sbjct 5719682 CAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGA 5719741 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| ||||| |||| | || |||||||| || ||||||| Sbjct 5719742 TCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATG 5719782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428340991182000