Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq19 113 4e-20 seq29 102 7e-17 seq204287 98.7 8e-16 seq23300 98.7 8e-16 >seq19 Length=13664266 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || || || || || || || || |||| ||||| || || | Sbjct 12085556 AAAAATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCC 12085497 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || || |||| || || ||||||||||| || || || || || Sbjct 12085496 CAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGA 12085437 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || | || || ||||| ||||| ||| | |||||| ||| ||| |||| || || Sbjct 12085436 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCTGACTA 12085377 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| || || |||||||| | ||| | || |||| |||| || ||| Sbjct 12085376 CAACATCCAGAAGGAATCCACACTGCATCTCGTGCTGCGCCTGCGGGGTGGT 12085325 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || ||||||| ||||| ||| ||| Sbjct 12085324 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAACCCAGT 12085265 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || ||||||||||| || || || || || || Sbjct 12085264 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 12085205 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| ||||||| |||| || ||||| Sbjct 12085204 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAT 12085145 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | || |||| |||| || ||| Sbjct 12085144 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGCCTGCGGGGTGGT 12085097 >seq29 Length=9066916 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 5719853 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 5719912 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || | || || || || ||||||||||| ||||| || || || Sbjct 5719913 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 5719972 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| ||||| ||| | |||||| |||||| | || |||||||| Sbjct 5719973 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCAGATTACAA 5720032 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || ||||||||| Sbjct 5720033 CATCCAGAAGGAATCCACC 5720051 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || ||||| || || | || || || || |||| ||||| ||||| Sbjct 5719620 GTCAACATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACTATCACCCTTGAGGTGGAG 5719679 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | || || || || ||||||||||| ||||| || Sbjct 5719680 CCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCA 5719739 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || | | || || || ||||| ||| | || ||| || || |||| || Sbjct 5719740 GATCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTCTCTGAC 5719799 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| || ||||| || || Sbjct 5719800 TACAACATCCAGAAAGAGTCAAC 5719822 >seq204287 Length=600 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || || |||| || ||||| || ||| Sbjct 292 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACCCTGGAAGTCGAGCCCAG 233 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || | || || || || |||||||| ||||| || ||||| || Sbjct 232 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCA 173 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || || ||||| ||| | |||||| || ||| | || |||||||| Sbjct 172 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTGTCAGATTACAA 113 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || ||||||||| Sbjct 112 CATCCAGAAGGAATCCACC 94 >seq23300 Length=271 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || || |||| || ||||| || ||| Sbjct 6 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAG 65 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || | || || || || ||||||||||| ||||| ||||| || Sbjct 66 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 125 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| || || ||| | || ||| || ||| | || |||||||| Sbjct 126 GCAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCAGATTACAA 185 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || ||||||||| Sbjct 186 CATCCAGAAGGAATCCACC 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418170861586000