Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq204287 107 2e-18 seq23300 107 2e-18 seq29 91.5 1e-13 >seq204287 Length=600 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || |||||| ||| || || || || ||| Sbjct 95 GTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCATCCTCCAGCTGCTTGCCA 154 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| ||||| || ||||| ||||| ||||| || Sbjct 155 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTC 214 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| ||||| |||| ||| | || ||||| ||||| || Sbjct 215 ACATTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATAGTCTTGCCAGTCAGGGTC 274 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 275 TTCACAAAGATCTGCAT 291 >seq23300 Length=271 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || |||||| |||||| || || || || Sbjct 203 GTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCATCTTCCAGCTGCTTCCCT 144 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || |||||||| || ||||| ||||| || Sbjct 143 GCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 84 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| |||| ||| | || ||||| ||||| || Sbjct 83 ACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 24 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 23 TTCACAAAGATCTGCAT 7 >seq29 Length=9066916 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || | ||||||| |||||| || || || ||| Sbjct 5719822 GTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCCAGCTGCTTGCCA 5719763 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| || || ||||||||||| || ||||| ||||| || Sbjct 5719762 GCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 5719703 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || || | ||| | || || || ||||| || Sbjct 5719702 ACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATAGTCTTTCCAGTCAGGGTC 5719643 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 5719642 TTCACAAAGATCTGCATG 5719625 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || || || ||| || || || || ||| Sbjct 5720050 GTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTGCGCCCATCCTCCAGCTGCTTGCCA 5719991 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || |||||||| || ||||| ||||| || Sbjct 5719990 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 5719931 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 5719930 ACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 5719871 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 5719870 TTCACAAAGATCTGCAT 5719854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418575753892800